TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCCCAGCATTCACTCAGATCAATAACTTGAAGCTTTGATTTTCC
TAAGATGTTAATAATAAAGAGCTTAAACCGAGGACTTTGAGAAACAGGTG
CCAGCATCTCTAGGAGCCTCTGACTAATAGAATCCAAGAATCCTTGAATA
ACAGATCCAACCCTGTTTGATCAGTATCTTAGAAAACAGGACACAGAACT
CTGCCTTTTCTTATAAACTATCTCATGTTTCTTTGCAAACTTTACAAAAG
ATGTTTTTATGTTTTTATCTTATTACAGTACTATTTGTAGTTCAGGAAGC
TGAAGAAATGTGACAACTTCAATATGTAATATTTCCAGTAACGGCACCAT
GCTTCTGATGCTTCCTGTCCATTTAGATGAGATAGAATCAACTTTGTGAG
AATTCAGAACAATTCTACTCTGCCTATCTGGGATCAATAACTGCAAATCA
TTTTTCTCCACATAAAATGCAAATATTTGCTCACATAATAAATCATTTGC
TAATGTTGTTTGAGATTGTGTCAAAGACTAAGTATGTGCACTCCTGGCTT
TGAATGCTTTGAATAGAATTTTAATGCGGCACTAATGAGTAGAGGCTTAA
TGCTAAGCACATGTTCTACATGTTAACTACATTTCCAGCCCTCACTCTAA
GTGTTAATAGACAATCTAATATATTGAATTAATTCTGCCTTATATTAAGT
TAGTACACATTAA

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATGAAC
AAGAAGCACCTGAAAAAATGTTCAGCATCATTAATCATCAGGGAAATGCA
AATCAAACAACCCTGGGATCCTACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAACTCAGGTGACAGCAGATGCTGGCAAGGATGTGGATAAAGAGGAA
CACTCCTCCACTGTTGGTGGGATTGCAAGCTTGTAAAACAACTCTGAAAA
TAAGTCTTGGAGTTCCTCAAAATATTGGACATAGTACTAATGGAGGATCC
CGCAATACCTCTCCTGGGCATATATTCAGAACACGCCCCCACTGGTAAGA
AGGACACGTGCTCCTTAATCTGTCCTTATATCTGAAGGATAGCTTTCTTT
TTTTTTGGTAAAATATTCCTGGTTTTCAAAGTTTATCATTTCGTAATCTG
GCTAAAAGATCTCTTTGTAGAGATCCACTCTAACCAGTGGTTGTTCTCTT
ATGTCTGATGGGACAGTCACAAGATCCTTGGAGTTGGTATAAATAAGTGT
CCTGGAAAATTATTGTATTCCCTAGGTAGTAGTTGTTTCCTTGGTTGTTT
TGTTTTTTGTTTTGCTTTGTGTTTTATTTGTTGTTGTTGGAAGTGGTGTT
TTCAGGTTTTGTTTTATTTCTTTTTCTTTCTTTCCATTTAAATTTTTTCA
GCTCTTCCACTTCAAATN

Query= MSMg01no280_j05.b1 MSMg01no280_j05.b1 CHROMAT_FILE:
MSMg01no280_j05.b1 PHD_FILE: MSMg01no280_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:27 2005
         (688 letters)



>mm_chr8_65454523_65455610
          Length = 1088

 Score = 1261 bits (652), Expect = 0.0
 Identities = 676/684 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcccagcattcactcagatcaataacttgaagctttgattttcctaagatgtt 64
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 gaattcagcccagcagtcaatcagatcaataacttgaagctttgattttcctaagatgtt 829

                                                                       
Query: 65  aataataaagagcttaaaccgaggactttgagaaacaggtgccagcatctctaggagcct 124
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aataataaagagcttaaaaggaggactttgagaaacaggtgccagcatctctaggagcct 769

                                                                       
Query: 125 ctgactaatagaatccaagaatccttgaataacagatccaaccctgtttgatcagtatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ctgactaatagaatccaagaatccttgaataacagatccaaccctgtttgatcagtatct 709

                                                                       
Query: 185 tagaaaacaggacacagaactctgccttttcttataaactatctcatgtttctttgcaaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 708 tagaaaacaggacacagaactctgccttttcttataaactatctcatgtttctttgtaaa 649

                                                                       
Query: 245 ctttacaaaagatgtttttatgtttttatcttattacagtactatttgtagttcaggaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctttacaaaagatgtttttatgtttttatcttattacagtactatttgtagttcaggaag 589

                                                                       
Query: 305 ctgaagaaatgtgacaacttcaatatgtaatatttccagtaacggcaccatgcttctgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctgaagaaatgtgacaacttcaatatgtaatatttccagtaacggcaccatgcttctgat 529

                                                                       
Query: 365 gcttcctgtccatttagatgagatagaatcaactttgtgagaattcagaacaattctact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gcttcctgtccatttagatgagatagaatcaactttgtgagaattcagaacaattctact 469

                                                                       
Query: 425 ctgcctatctgggatcaataactgcaaatcatttttctccacataaaatgcaaatatttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctgcctatctgggatcaataactgcaaatcatttttctccacataaaatgcaaatatttg 409

                                                                       
Query: 485 ctcacataataaatcatttgctaatgttgtttgagattgtgtcaaagactaagtatgtgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctcacataataaatcatttgctaatgttgtttgagattgtgtcaaagactaagtatgtgc 349

                                                                       
Query: 545 actcctggctttgaatgctttgaatagaattttaatgcggcactaatgagtagaggctta 604
           |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 348 actcctggttttgaatgctttgaatagaattttaatgtgccactaatgagtagaggctta 289

                                                                       
Query: 605 atgctaagcacatgttctacatgttaactacatttccagccctcactctaagtgttaata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atgctaagcacatgttctacatgttaactacatttccagccctcactctaagtgttaata 229

                                   
Query: 665 gacaatctaatatattgaattaat 688
           ||||||||||||||||||||||||
Sbjct: 228 gacaatctaatatattgaattaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)