BAC Information

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BAC

Clone NameMSMg01-280K04
Chromosome8 (Build37)
Map Location 38,023,487 - 38,191,842
singlet/doubletdoublet
Overlap geneAI429214, LOC666877, LOC100041616, 1700016D18Rik
Upstream geneLOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik
Downstream geneLOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280K04.T7 (MSMg01no280_k04.b1)MSMg01-280K04.TJ (MSMg01no280_k04.g1)
ACCAG417678AG417679
length742740
length of high quality
(start - end)		587 (127 - 713)664 (77 - 740)
definitionCHROMAT_FILE: MSMg01no280_k04.b1 PHD_FILE: MSMg01no280_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:31 2005CHROMAT_FILE: MSMg01no280_k04.g1 PHD_FILE: MSMg01no280_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,023,487 - 38,024,073)(38,191,179 - 38,191,842)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACCCCAATTCCCGATATCCCCTATGGCTCATTACTGATTTTTATA
GGTATTTGAATGTAAGTATATACATCTCTAAAAATATCAAAATCCAGCCT
CCACCTGTGAGGGGGGGGGGTGTCACATTTGTGTTGTGGGTCTGGGTTTC
TCCATTTGAAGCTTGCTCCTGACCAATGGGACTTGGGTGGAGGGTATAAA
GGGCGTTCCCCAAAGATGAATGGATGAACTGTCTCAGGGTTCTGAAGGTG
CCTCAAGTCTGAGCCTCCTGCTTCTGCACCACCTCATCCCCAAGCCCCAA
GGACAAGTAAGGTCTGGTTGGGGGCAGGGGTGCAGGGCATAAAGCAGCAA
GCTACCACAGACACAGATATTTGACTTTAAGACAAAACCAATCCCGGGCA
TCTTGAACAATAAGCCCAATGATCTTGGAGACAGAATATCTGGGTGATAA
GTTCTTTGATTGTCATGAACCATGTAGTAGCGAAACAATTCTGGAAACAC
TGGAGTTCCCCAAAGATTTATTTATTCCTGGCATATGTGTTCAGAAATCA
CCTTAGCACGGGTGTCGAAAGCCTTCTCTTCTTGATGGGAAGCCAATGAA
GAGATCGGTACAGTTCAACGAGAGCAAGAATAAAACCAAAGCATGTGCGG
GCTACATCAGCAAATAGAGTTAAGAGAATTAGAAGGAACATN

CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCAGATTTTCTTCTTCATCTAG
AGCTACATTTTCTAGTATGCCTACATAAATACAAAAGAGATTCTTCTAGG
CAATGGCTACAGTCTAGTGATTATCAAACAATGGTGCAGAGTCCAGTGTC
CTAGGGCAACCTTGGAAACAATAATTATCAGGTTTTACACCTGCGTATGA
ACTCAAAAGTCCACAGTAGAGCCAGCACTAAAATTTAAGTGTTAAAGTCC
TATAATAAGGCCTATTTCTTTAGTAACAATTGTTCTCTGATATGCATGCT
TCCATTTTTAATTCTTCACTATTCATCTTCATATCAATTCATATAAATTA
TTGCATCTCTGAAGCCTATGTGATCTGCGTACTGTAGACCTATCTTTACC
TGGTTGAATTCTTTTAAAGTTATTGCTCATATTTGTTGGATAAATCTTTC
TTATTTTACTTCTATTGAGTTCTCTTGAGCCAGGATTCTACTAATTTCCT
TTCATTAAAATGGTGTCGATCAAGACTGTCAATGACCACTATAAGGCTAC
ATTCAATGAACCAGTCAGCATCTTATTTGGATGAAACTGGGATTCTAGCT
GAACACTTCCTTATCCCTGAAACATTGTTTTTTGGAATATTCTTCCTTGT
GCCATCTGTGTATCTGTTGTATCCATGTCTGCACAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_k04.b1 MSMg01no280_k04.b1 CHROMAT_FILE:
MSMg01no280_k04.b1 PHD_FILE: MSMg01no280_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:31 2005
         (587 letters)



>mm_chr8_38023287_38024273
          Length = 987

 Score = 1120 bits (579), Expect = 0.0
 Identities = 585/587 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaaaatatcaaaatccagcctccacctgtgaggggggggggtgtcacatttgtgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaaaatatcaaaatccagcctccacctgtgaggggggggggtgtcacatttgtgttg 260

                                                                       
Query: 61  tgggtctgggtttctccatttgaagcttgctcctgaccaatgggacttgggtggagggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtctgggtttctccatttgaagcttgctcctgaccaatgggacttgggtggagggta 320

                                                                       
Query: 121 taaagggcgttccccaaagatgaatggatgaactgtctcagggttctgaaggtgcctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagggcgttccccaaagatgaatggatgaactgtctcagggttctgaaggtgcctcaa 380

                                                                       
Query: 181 gtctgagcctcctgcttctgcaccacctcatccccaagccccaaggacaagtaaggtctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgagcctcctgcttctgcaccacctcatccccaagccccaaggacaagtaaggtctg 440

                                                                       
Query: 241 gttgggggcaggggtgcagggcataaagcagcaagctaccacagacacagatatttgact 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagggggcaggggtgcagggcataaagcagcaagctaccacagacacagatatttgact 500

                                                                       
Query: 301 ttaagacaaaaccaatcccgggcatcttgaacaataagcccaatgatcttggagacagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaagacaaaaccaatcccgggcatcttgaacaataagcccaatgatcttggagacagaa 560

                                                                       
Query: 361 tatctgggtgataagttctttgattgtcatgaaccatgtagtagcgaaacaattctggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctgggtgataagttctttgattgtcatgaaccatgtagtagcgaaacaattctggaa 620

                                                                       
Query: 421 acactggagttccccaaagatttatttattcctggcatatgtgttcagaaatcaccttag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acactggagttccccaaagatttatttattcctggcatatgtgttcagaaatcaccttag 680

                                                                       
Query: 481 cacgggtgtcgaaagccttctcttcttgatgggaagccaatgaagagatcggtacagttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacgggtgtcgaaagccttctcttcttgatgggaagccaatgaagagatcggtacagttc 740

                                                          
Query: 541 aacgagagcaagaataaaaccaaagcatgtgcgggctacatcagcaa 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacgagagcaagaataaaaccaaagcatgtgcgggctacatcagcaa 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no280_k04.g1 MSMg01no280_k04.g1 CHROMAT_FILE:
MSMg01no280_k04.g1 PHD_FILE: MSMg01no280_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:31 2005
         (664 letters)



>mm_chr8_38190979_38192042
          Length = 1064

 Score = 1284 bits (664), Expect = 0.0
 Identities = 664/664 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcagattttcttcttcatctagagctacattttctagtatgcctacataaatacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cctcagattttcttcttcatctagagctacattttctagtatgcctacataaatacaaaa 805

                                                                       
Query: 61  gagattcttctaggcaatggctacagtctagtgattatcaaacaatggtgcagagtccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gagattcttctaggcaatggctacagtctagtgattatcaaacaatggtgcagagtccag 745

                                                                       
Query: 121 tgtcctagggcaaccttggaaacaataattatcaggttttacacctgcgtatgaactcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgtcctagggcaaccttggaaacaataattatcaggttttacacctgcgtatgaactcaa 685

                                                                       
Query: 181 aagtccacagtagagccagcactaaaatttaagtgttaaagtcctataataaggcctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagtccacagtagagccagcactaaaatttaagtgttaaagtcctataataaggcctatt 625

                                                                       
Query: 241 tctttagtaacaattgttctctgatatgcatgcttccatttttaattcttcactattcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctttagtaacaattgttctctgatatgcatgcttccatttttaattcttcactattcat 565

                                                                       
Query: 301 cttcatatcaattcatataaattattgcatctctgaagcctatgtgatctgcgtactgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttcatatcaattcatataaattattgcatctctgaagcctatgtgatctgcgtactgta 505

                                                                       
Query: 361 gacctatctttacctggttgaattcttttaaagttattgctcatatttgttggataaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacctatctttacctggttgaattcttttaaagttattgctcatatttgttggataaatc 445

                                                                       
Query: 421 tttcttattttacttctattgagttctcttgagccaggattctactaatttcctttcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcttattttacttctattgagttctcttgagccaggattctactaatttcctttcatt 385

                                                                       
Query: 481 aaaatggtgtcgatcaagactgtcaatgaccactataaggctacattcaatgaaccagtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaatggtgtcgatcaagactgtcaatgaccactataaggctacattcaatgaaccagtc 325

                                                                       
Query: 541 agcatcttatttggatgaaactgggattctagctgaacacttccttatccctgaaacatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcatcttatttggatgaaactgggattctagctgaacacttccttatccctgaaacatt 265

                                                                       
Query: 601 gttttttggaatattcttccttgtgccatctgtgtatctgttgtatccatgtctgcacaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttttttggaatattcttccttgtgccatctgtgtatctgttgtatccatgtctgcacaa 205

               
Query: 661 aaat 664
           ||||
Sbjct: 204 aaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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