BAC Information

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BAC

Clone NameMSMg01-288C07
Chromosome8 (Build37)
Map Location 10,048,068 - 10,048,358
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288C07.T7 (MSMg01no288_c07.b1)MSMg01-288C07.TJ (MSMg01no288_c07.g1)
ACCAG418048AG418049
length736737
length of high quality
(start - end)
325 (47 - 371)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no288_c07.b1 PHD_FILE: MSMg01no288_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:09 2005CHROMAT_FILE: MSMg01no288_c07.g1 PHD_FILE: MSMg01no288_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCCTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
CTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGTTTTTCCCCAC
TTTCTCCTCTATAAGTTTCTGTGTCTCTGGCTTTATGTGAAGTTCTTTGA
TCCATTTAGATTTGACCTTCCCACAACGAGATAAGTATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTAGCAAGACAGTTTTAAGTTCAA
TAATTTGTATGCAATCATGATTCCAAGAAGGACTCAATTATTTTTAGTTA
ATAAACTAAATAAAAACTCCAGACAGTTGAAGCCCCTTAATATAGAGCAG
CAACCAAACACATGACAAGATGCCATGATGCTTTCAGGAGGCTACCGTGT
TCAGGATGAGTGTACTCAGCTTGATCTATTTACAGTTATCCAGCCTTGGT
TCAGAGATCACTGTAGTCCACAGTTCCTTCAGGGTN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGTCATGATGGACTATGGTGCAG
ACACATAAGCCAAATAAAAGCTTTCCTCCCCAATCTGCTTTTGATTATGG
TGTTTATTACAACAGAAATCATAGAAGACAGGAGTCAACATAAAGAAACT
GTACTATCACCCTCAGAAGGCAGAAAGTAAGGCTGTGAGACGCTGACCTT
CAATGGAGGAGTGCTCAAGGGCAGAAGAGGGAGAGGATTTGGGTCACTGG
TTTTGAGTGGACAGCTAGAAAACCATCCAGCCATATTATAGCTCACTCTT
TCCAATATACATGTAATCTGTGTGTGCCCGCGCCGCGCGTGTACATTTGA
CAGATGTATATAATATGTGACCCCATCAACATAAACAGATATTCCAATGT
CTCTGTATAGATCAATTCTTGGGTTGGAAACATTACAAAGTTATTTCTTT
CAGGACATGGTGGTGCACACCTTTAATCCTAGCACTTGGGAGGCAGAGGC
AGGTGGCTCTCTGTGAGTTCTGGTCTACAAATCGAGTCCAGGAAAACCAG
GACTTGATTTATTTATAAGTAAACAAACAAAAGGGTACATAAAATTATTT
CTCTTCACTATAGCTCATTTTATAACCAATTGTAGAATTTGGTTATAAAT
CCTTTCCCCTTTTTACGTCATTATTATTATTATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_c07.g1 MSMg01no288_c07.g1 CHROMAT_FILE:
MSMg01no288_c07.g1 PHD_FILE: MSMg01no288_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:09 2005
         (293 letters)



>mm_chr8_10047764_10048455
          Length = 692

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcatgatggactatggtgcagacacataagccaaataaaagctttcctccccaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttgtcatgatggactatggtgcagacacataagccaaataaaagctttcctccccaatct 536

                                                                       
Query: 61  gcttttgattatggtgtttattacaacagaaatcatagaagacaggagtcaacataaaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 535 gcttttgattatggtgtttattacaacagaaatcatagaagacaggagccaacataaaga 476

                                                                       
Query: 121 aactgtactatcaccctcagaaggcagaaagtaaggctgtgagacgctgaccttcaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aactgtactatcaccctcagaaggcagaaagtaaggctgtgagacgctgaccttcaatgg 416

                                                                       
Query: 181 aggagtgctcaagggcagaagagggagaggatttgggtcactggttttgagtggacagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aggagtgctcaagggcagaagagggagaggatttgggtcactggttttgagtggacagct 356

                                                               
Query: 241 agaaaaccatccagccatattatagctcactctttccaatatacatgtaatc 292
           |||||||||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 355 agaaaaccat-cagccatattatagctcattcttttcaatatacatgtaatc 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)