Query= MSMg01no288_d03.b1 MSMg01no288_d03.b1 CHROMAT_FILE:
MSMg01no288_d03.b1 PHD_FILE: MSMg01no288_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:13 2005
(715 letters)
>mm_chr8_111283914_111285024
Length = 1111
Score = 903 bits (467), Expect = 0.0
Identities = 533/559 (95%), Gaps = 9/559 (1%)
Strand = Plus / Minus
Query: 4 ggaattcatttgaaaactttcctatcaagtaaattagagggttaaatgattcaaacgtca 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 550 ggaattcatttgaaaactttcctatcaagtaaatcagagggttaaatgattcaaacgtca 491
Query: 64 caccaacacactgtccgaaatcacccagagactctttgaccttctcagtccatgttcctg 123
|||||||||| ||| | |||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 490 caccaacacaatgtgcaaaatcacccagagactctatgaccttctcggtccatgttcctg 431
Query: 124 attataaaactccacttagcttttgctccaatcacagaaacagtagttagggtcccagac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 430 attataaaactccacttagcttttgctccaatcacagaaacagtagttagggtcccaaac 371
Query: 184 tttacgtaaggccagatgagcatcctgccacttctccagaacatgaattatagtgaagtt 243
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 t----gtaaagccagatgagcatcctgccacttctccagaacatgaattatagtgaagtt 315
Query: 244 aacaagatgcaggaaacagacaacagacttcagaatactgggcagttgtttacacttgag 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 314 aacaagatgcaggaaacagacaacagacttcagaatactgggtagttgtttacacttgag 255
Query: 304 ttagatcccctatgtcaatccatcatggggcacctattaagagtcgccacagccagtgag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttagatcccctatgtcaatccatcatggggcacctattaagagtcgccacagccagtgag 195
Query: 364 gcaacacagcgcgtacaggtgcctgcttgccgggcctgaccacctgagaccaaggaccca 423
||| | ||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 194 gcagctcagtgcctacaggtgcccgcttgccgggcctgaccacctgagaccaaggaccca 135
Query: 424 tagggcggaaggagagaatggactctcacaagctgtcctctgacctccatacactgggca 483
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 134 tagggcagaaggagagaatggactctcaca-gctgtcctctgacctccatacactgggca 76
Query: 484 tacaacacgtgcacccacacacatgcccacataataaatgaatgagtgaatgaatgaatg 543
||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||
Sbjct: 75 tacaacacgtgcacccacacacatgcccacagaatgaatgaatga----atgaatgaatg 20
Query: 544 tgaacttcaaaaaaagtta 562
|||||||||||||||||||
Sbjct: 19 tgaacttcaaaaaaagtta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1111
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1101
Effective search space: 776205
Effective search space used: 776205
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no288_d03.g1 MSMg01no288_d03.g1 CHROMAT_FILE:
MSMg01no288_d03.g1 PHD_FILE: MSMg01no288_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:13 2005
(645 letters)
>mm_chr8_111119460_111120505
Length = 1046
Score = 1149 bits (594), Expect = 0.0
Identities = 635/654 (97%), Gaps = 9/654 (1%)
Strand = Plus / Plus
Query: 1 tccatgttgtgtatgaaacttcagatcctcttccgtgcggggcccatatgggcccttatc 60
||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct: 193 tccatgttgtgtatgaaacctcagatcctcttccgtgcggggcccataagggcacttatc 252
Query: 61 ccaggacagcataaaggggaagagtctgcccagattcccatgacaactcccttttcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ccaggacagcataaaggggaagagtctgcccagattcccatgacaactcccttttcctga 312
Query: 121 aagtctctgacagacacttcctggggagacaggaagtgcggacaggaagacaactgaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagtctctgacagacacttcctggggagacaggaagtgcggacaggaagacaactgaggt 372
Query: 181 cgtctcttcccatgtccggctcgtcccacctcctagattcatctggtagctgacaacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cgtctcttcccatgtccggctcgtcccacctcctagattcatctggtagctgacaacttc 432
Query: 241 gggctgtgcttctgtgttttcgctggtcccgtccccagctgttctggagaacgttgggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gggctgtgcttctgtgttttcgctggtcccgtccccagctgttctggagaacgttgggag 492
Query: 301 gcagccaatgtggcttttgtcccctttttcccagaagccacggggatctcaaacatacct 360
||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gcaaccagtgtcgcttttgtcccctttttcccagaagccacggggatctcaaacatacct 552
Query: 361 cagtaataaactgcataggagaaactcatgaggggaagagacgtcaaaaaaaaaaa---- 416
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cagtaataaactgcgtaggagaaactcatgaggggaagagacgtcaaaaaaaaaaaaaaa 612
Query: 417 -----gtgatataactgactccaaagtaaaaataaatgataggctgacttcatgtttgta 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaaatgtgatataactgactccaaagtaaaaataaatgataggctgacttcatgtttgta 672
Query: 472 gttaacattatgacgttaacagttattcagtaagtgttgcaggatcctgagtgtgtgcca 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gttaacattatgacgttaacagttattcagtaagtgttgcaggatcctgagtgtgtgcca 732
Query: 532 agcactctgctagggttggccatagagtattgcacaatatagatatagtccctgctttct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agcactctgctagggttggccatagagtattgcacaatatagatatagtccctgctttct 792
Query: 592 aaagccaacagtgtcaaaggatgacatcaggggagagactcacctcacaggagt 645
|||||| |||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 793 aaagccgacagtgtcaaaggatgccatcaggggagagactcacctcaccggagt 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
