BAC Information

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BAC

Clone NameMSMg01-288G10
Chromosome8 (Build37)
Map Location 18,516,983 - 18,517,291
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd1, LOC665638, LOC100040466
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288G10.T7 (MSMg01no288_g10.b1)MSMg01-288G10.TJ (MSMg01no288_g10.g1)
ACCAG418238AG418239
length772723
length of high quality
(start - end)
314 (49 - 362)247 (73 - 319)
definitionCHROMAT_FILE: MSMg01no288_g10.b1 PHD_FILE: MSMg01no288_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:28 2005CHROMAT_FILE: MSMg01no288_g10.g1 PHD_FILE: MSMg01no288_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAGATTCCCCTTGTCTCTGCTTCCCAAGTATTGGGATGAAA
GGCATACACCACCATATCCTGCTCCATATACAATTTTTTTAAATGTCCAA
TACTGGAGTATGAAATTAAGGATATCACATGTTATAAGAAAGGTCCTTCC
CTCATGGACACTTTTGCAAAAGCTATGGGTTAATCAAAACTGGGACAAGA
TCCATGGTCTGTGCTCTAGTCTATCAGTTTTCCAAAAATGTGCCCTACCA
AATAGCACAGTGCATATGTCCAGATGGTCATGGCAATCTTGATAACAGCA
AAAAAAAAAAAATTTATCTTTTTCCCCCACCCCCCAATAAAACTGGCATA
TGTAACAATATGATTTAAACACACCGTGAAAATGAACCCTAGCTGAGGAG
CTATTGGTGATCAGTGTGGGGGTGGGGGGGGTAAACATGGCTGCTGACGG
GGCACCTATGCTCCGACCTACTCGCCTATTTGTACCCACCTGTCTTCTCC
TTATAATTTACTCCCCCGATTTAACTTGTCTATGATCCTGGCCCCAATAG
GCAAATTAATTACTTGTTCATCATATTCACCACGCTTTTTTTANTGTCGC
TTTATGCGTTTCTTCCTTCCCCCATATCTTTATTATACCATCCCATCCTC
CATTATCTCCGCTTTCCTTTCCCCTCCCTTATTCTCTCCCATTCTTTCTC
CTCTACCTCCTCTTCTCCCCCG
CACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCCCAAAATTCAGAGATCTGCATGCTTCTGCCTCCTG
AGTGCTGAGACGAAAAGCATGCCTGCCACTACCCAGCTATTTTTCCCCTC
AAAGTCTTCTGTATTGCTCCAAACAACAGCATGATTGGGCCTGTCACGGT
AACACCCCACTTCAGGTAGAAACTGTTCAATTGCTGTGATAAAAACCACA
CCCAGGACAATCTGTAGAAGGAGTTTTATTTGGGGTTTGCAGTCCCAGAG
GAAGTGTATCATTGTCGTGTTTTTTCGGACAGCGTGGCAGGAAGCCATAG
TGTTGATTTAGTTACNGACCACCCCACCCCCTGATCCACAAACAGGAAGC
AGAGAGAGGTCCGCTGCACCTGATGAAAAAAGATGTGAAACCTCAAAGCC
TGCCCTCAGTGGCACGATTCCTCAAAAAAGACCACACCTCCTAATCTTCC
CCAAACAGTTCTACCATCCAGGGATGCAGTATTCAAACACAAGTCTATGA
GGCCATTATTTTTTTTTCAAACCACCACACTGTTATTACTTTTTACAACT
TAACTCTAATATAAAGGAGGAAATTAAAAGTTTAGTGATATTTAAGACAC
GGAAGACTTACAACCCACTATCCAAAATAAGTGATTCTCTCCTTTTAAGA
AAATATTAGGGGAGAGGGCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_g10.b1 MSMg01no288_g10.b1 CHROMAT_FILE:
MSMg01no288_g10.b1 PHD_FILE: MSMg01no288_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:28 2005
         (314 letters)



>mm_chr8_18516779_18517491
          Length = 713

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%), Gaps = 1/310 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagattccccttgtctctgcttcccaagtattgggatgaaaggcatacaccac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagattccccttgtctctgcttcccaagtattgggatgaaaggcatacaccac 264

                                                                       
Query: 65  catatcctgctccatatacaatttttttaaatgtccaatactggagtatgaaattaagga 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 catatcctgctccatatacaatttttt-aaatgtccaatactggagtatgaaattaagga 323

                                                                       
Query: 125 tatcacatgttataagaaaggtccttccctcatggacacttttgcaaaagctatgggtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatcacatgttataagaaaggtccttccctcatggacacttttgcaaaagctatgggtta 383

                                                                       
Query: 185 atcaaaactgggacaagatccatggtctgtgctctagtctatcagttttccaaaaatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcaaaactgggacaagatccatggtctgtgctctagtctatcagttttccaaaaatgtg 443

                                                                       
Query: 245 ccctaccaaatagcacagtgcatatgtccagatggtcatggcaatcttgataacagcaaa 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 ccctaccaaatagcacagtgcatatgtccagatggccatggcaatcttgataacagcaaa 503

                     
Query: 305 aaaaaaaaaa 314
           ||||||||||
Sbjct: 504 aaaaaaaaaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)