BAC Information

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BAC

Clone NameMSMg01-288H12
Chromosome8 (Build37)
Map Location 49,252,492 - 49,252,725
singlet/doubletsinglet
Overlap genenone
Upstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream geneOdz3, 2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288H12.T7 (MSMg01no288_h12.b1)MSMg01-288H12.TJ (MSMg01no288_h12.g1)
ACCAG418287AG418288
length760758
length of high quality
(start - end)
165 (44 - 208)236 (126 - 361)
definitionCHROMAT_FILE: MSMg01no288_h12.b1 PHD_FILE: MSMg01no288_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:33 2005CHROMAT_FILE: MSMg01no288_h12.g1 PHD_FILE: MSMg01no288_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCGCTCAATAGCAGCTACCTCACAACCATATACTCCTGGGTTCCCC
ATGTGGACAGTAGACAGATAGACCGACAGATGGATGGACAGACAGATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATTGGAATAAATCCATGTGAAACATAGCAAAGTGTGACTGGCACCTT
GTCTCATCCCTAAGAGATTCCTCATACCCTCCTCAAAGCCATCACCACAG
GATGGGAGTGGAGCCATCTCTCCTGACAGAGGAATGGGTTTCTCCTCTCA
GTTCTGTGTTCTTATTTTTTGGCACCCCTCCCCCCCACACTAACGTGACC
ACTAATAAGGAGTAACCCCCACGCTATAGAAAGAGGGTCTTTCTCATCGC
GAGGTTTAATCCACGGGATTGTTTTGACACTGACGTTGTGAAGAATCCAT
CTGCGTGTCTGCCACTGCAGAAGCACGTGACAAAACACAGACAGGACCTT
TCAAGCTCTGCTATGGTCCCCATACTGAGCTGCTATCATCTACCCTCTTC
TCCAAGAAGTTTAGATTCTCGTGCTTCCGCCCTTCCATGAAGTCAGCTTT
CTGTCCCCTGTAGGGGTTTTGGCGGCGGTGGTGTTGCCCCTTCTTTCTTT
CCCTTCTCCTTCTTTTCCTCCCCTTCTTTTTCCTCTCTTTTTTTCTTCGC
TGTGTCCCTA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAACTTCTCCAATACATTCTGCTGTGGTG
TTTGAAATACCACCACTTTCATCCAAGGGACCTATTCTGGACAGCACTGG
GTGGCAGGTTTCTGTACAGAAAGAGCACCAAGTAGCCTCGTATAGAGCTT
CACGTTTGACAAGAGGCGGAAAGAGACAACGGTGCCCAGCTAGCACAGGA
TGTTTATGAGTTCTGTAGGTGTGGCTTTGCGATTTGTTTTTGTTTTTTTG
TTTTTGTTTTGTTTTGTTTTTCTTTTCAGGAACTGTTTCTCACAATGCTC
CTTGAAGAAGTTCTTTATTGTATCCCCCCCCCCACGAAAGAGTCCGACGC
CAGGTGAGCTCTCTTAACCTTCTGCTCACAGAAAAAACAAGCATTGCTTC
GGAGATGAGGACACATAGTTTATTTCCTTTCCCAAGGGCTCCTGAAGTGA
ATAATGTGTGCCAGGACCTGACTTCCAAGTTCACCATCTTTCCATGGCTC
TCCTGAAGGGGGGAAAATGACTTCCCCATCTCCCTCCCTCCAGAAACAAT
GTATTTCCCTCATCTTCTTAAGGGGCAACATGGTGGAAACAACGTTACCC
ACTGTCACTGTGTCTGATAGGGTAATTCATGCTGCCTGTCCAACTGAAGT
GCTTTGTCTGGGTCAGCTTTTTTGACTTCCAGAGCCTTTACTCTTAGGCT
CCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_h12.g1 MSMg01no288_h12.g1 CHROMAT_FILE:
MSMg01no288_h12.g1 PHD_FILE: MSMg01no288_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:33 2005
         (236 letters)



>mm_chr8_49252292_49252926
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%), Gaps = 1/235 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggacctattctggacagcactgggtggcaggtttctgtacagaaagagcaccaagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggacctattctggacagcactgggtggcaggtttctgtacagaaagagcaccaagtag 260

                                                                       
Query: 61  cctcgtatagagcttcacgtttgacaagaggcggaaagagacaacggtgcccagctagca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 cctcgtatagagcttcacgtttgacaagaggcagaaagagacaacggtgcccagctagca 320

                                                                       
Query: 121 caggatgtttatgagttctgtaggtgtggctttgcgatttgtttttgtttttttgttttt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggatgtt-atgagttctgtaggtgtggctttgcgatttgtttttgtttttttgttttt 379

                                                                  
Query: 181 gttttgttttgtttttcttttcaggaactgtttctcacaatgctccttgaagaag 235
           |||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttttgttttgtttttcccttcaggaactgtttctcacaatgctccttgaagaag 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 635
Length adjustment: 9
Effective length of query: 227
Effective length of database: 626
Effective search space:   142102
Effective search space used:   142102
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)