BAC Information

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BAC

Clone NameMSMg01-289F20
Chromosome8 (Build37)
Map Location 119,853,586 - 119,853,797
singlet/doubletsinglet
Overlap gene4933407C03Rik
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan
Downstream genePlcg2, 4632417N05Rik, Hsd17b2, Mphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289F20.T7 (MSMg01no289_f20.b1)MSMg01-289F20.TJ (MSMg01no289_f20.g1)
ACCAG418936AG418937
length729729
length of high quality
(start - end)
219 (45 - 263)187 (131 - 317)
definitionCHROMAT_FILE: MSMg01no289_f20.b1 PHD_FILE: MSMg01no289_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:39 2005CHROMAT_FILE: MSMg01no289_f20.g1 PHD_FILE: MSMg01no289_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTAGCCCATGCTTAGCTTAGGTCAACAAGACACAAGAAAGACAGT
GTGGTCCTCACAGCTAGCATCTGCCCCAAAGTAGTGTTGGCATTTATTTC
CTGCTTCTATATAAATAAATATGTATTACATACGTGTGTGTAAACTATAC
ACACACACACACACACACACACACACACACACACACACACATATATATAC
ATACATATATATTACATGATATCTTGTTAGTAACCCAAGGTAGTTTCAAG
GTCCGGCCTTCTTGCTTCTCCTTGTTTGCTGGAGATATAGGTGTGGTGAC
ACACACATATATTTGTGAGTTACCNANGGCCGGNCCCACAAAATAGTTGT
ACTTCTTGCTAGGTCTGCCCCCCACAATAAAAAAAAAAAAACCGCCTGGT
GGTTGGCCTGCGCTCACAGCTGACTGACTGCTGGTTCTTTCCCTGTACAT
TCCTCATGCTTCTTTCTCACGGCTGCTGCCTGCTAAACTGATCTCTCTCC
ACACAGATGGTGTGACTTAATCTACGCGCTCTCCCCTCCTCTCCTTTCAT
ACACTCAACATATATTTAGGTAGCTTGAAAAGTTTGGCAGGCACTTATCC
ATTCTTTCCTCCCTATTCTTTCGTCTGGGTTTGGCCTCCCCTCCCTTCCT
CCCTCCCTACCATCCTCCTTCCTATCCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGGGGTATGTAGTAAGTTA
TCAATCTTGCCAGATTTGCACCAAAAAGATTTGTAAAGAGTTTTTTGTTT
GTTTGTTTTGTTTTTGTTTTTTAAAGATGATTGCAACAAATTGATAACAA
CCTGATTGGCCAAGAAAAGGGGGAAGAACAGGGCCAAAGCAGGCTGGGAA
GAGGGAGGAAGGCTTCCTGGAGGTGGTGACCTTAATCTGAGCCTGGCAAA
GGACAGAGTATGTGGGTTGTTTTTTTTTAAGAGGTGACAAGAGAGTTCCA
TGAAGCTTTACATCANTTCACCCNACCCCCCCCCAAGGGACTCACCGGGG
TTGGAACGAAGGGCGCCCCGCACCCAAGGCATGCAAATCAGTAGGCCGGA
CCTTGGGTTCTGCAGGGTCTGCAGAACCTTGCTAAGGCAATCGGGAGCTA
CAGCAGTCTTAGAGCAGATTGGCACACTGAACAGAATTCAACTTAGAAAG
AATTCTGTGAAGAGAAAGGAGGGTGCCAGCCATGCAGTAAGCAGCAAACA
TGAACCTGATGCCAGCTGTATGCAGGGCAATGTTCCAGAAGCTGAGATCC
GAAATATGTACACTTACGTGAGGTGTGGTGACATAAACCTATAACCCAGC
AAGTTCGAAACTGAGTCAGGGTCATAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_f20.b1 MSMg01no289_f20.b1 CHROMAT_FILE:
MSMg01no289_f20.b1 PHD_FILE: MSMg01no289_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:39 2005
         (219 letters)



>mm_chr8_119853383_119854001
          Length = 619

 Score =  391 bits (202), Expect = e-113
 Identities = 211/216 (97%), Gaps = 4/216 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttagcccatgcttagcttaggtcaacaagacacaagaaagacagtgtggtcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttagcccatgcttagcttaggtcaacaagacacaagaaagacagtgtggtcc 263

                                                                       
Query: 64  tcacagctagcatctgccccaaagtagtgttggcatttatttcctgcttctatataaata 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcacagctagcatctggcccaaagtagtgttggcatttatttcctgcttctatataaata 323

                                                                       
Query: 124 aatatgtattacatacgtgtgtgtaaactatacacacacacacacacacacacacacaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatatgtattacatacgtgtgtgtaaactatacacacacacacacacacacacacacaca 383

                                               
Query: 184 cacacacacacacatatatatacatacatatatatt 219
           ||||||||||    ||||||||||||||||||||||
Sbjct: 384 cacacacaca----tatatatacatacatatatatt 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)