BAC Information

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BAC

Clone NameMSMg01-289G24
Chromosome8 (Build37)
Map Location 16,074,879 - 16,075,166
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneMyom2, EG665599, EG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289G24.T7 (MSMg01no289_g24.b1)MSMg01-289G24.TJ (MSMg01no289_g24.g1)
ACCAG418988AG418989
length738754
length of high quality
(start - end)
40 (120 - 159)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no289_g24.b1 PHD_FILE: MSMg01no289_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:45 2005CHROMAT_FILE: MSMg01no289_g24.g1 PHD_FILE: MSMg01no289_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTATACGACTCCTANATCCGCAGTGCGCGGAATCCTTGAT
CTACTAGAAAATTTTCGGGTTTGGCTGATTAGAGGTACATGGATATCAGC
AATTTAGCCCCCAAAGGAGATCTCGCACCAACCATCACACAAGCTGTTTT
TAAGGAGCGTCTTGAGGGCTACAAAGTACTGGGACCCACTCTGTCTGCCC
AGTACTGTGAAGGATAAATGAGGGTGTGNATGTGTTTTTTGCCTCCTATT
TCAAGCATTATACGAGAGACTGATCTCTGGATGAGATGATCAGGGCTTTT
AATGCCTTTAGGCCGACTGATTCCCGGGACCAAGAAGTTTTTATATTTCC
CCCCCCCCCCCCAAAAAANANAGGAGAGGAAAGGAGAAGAAACCCCCCCC
TATAAAAAAAAAAAAAAAAATTAGATGAGAGGGGTCTCACATATGGTCGA
TCCTTAGCCCCATTGCAGTTATTTCATATATGTACACATGACCCAGATTC
GCCCCGACGGCCTCAGCGCCTGTAACTAAAACGACAAGATGATATCAGTA
CCTGGCTAAGAAAAAACCATTAGTTAGTGCTGCTCCCTACAGAGAGCACC
CCCCGGGTAAGAAATAATATTTGACAATAACCACAAATCCAGTCCCCGAT
TATTTTTGTACTTTCCCATCCTCGCAATTACCGGAATGCCAAAACCTCTT
CGTTATTGTACACCAAGCCCTCCCTCCGACCTTCCTTC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTAAATGCCCTGCAGTTTATTCTTAGT
GTTGTTGTGCACCTTCCGTACCCCGACGAAGTAGAAGGCCACACACATGC
CTCTTAGATGGATGGTGGCAAAGGTTGATGCATGGGTTTCTCATTCTCTC
CCAGTAATTTGGCATGAGTTTTTACCCACTCTAGGCTCTGTGAGACCCCA
TAAAGAAGCACTCAGCCTCTCACTCAACACAGGGGCGTGGCAGGGTCGGT
GGGGGCGTGGTGGGGAGGGCCAGTTCGTGAGGGTTTCCTTTCTCCCTCAC
CTGCCTTCCAGTTTTATTTGTATATTGCTCTCACTTCTCTCTCAGACACT
TTCACATTTGTTTTCGCCCCCCCACAGATCTCGAATTAAGACAGAAAGAA
CAGTAACAAGAGGAAAGAACTCTTGCATTCTGCCTGAAAAGCCTGGATGA
GCAGGAACGGGAGGTCCTAATGGCAGGAGGGTTCCCAGCAGAATGCGACC
CTCTAGATGTTACAAGGGTCCACTAAGCACTGCCCCTCTCTCCCAATTTC
NCTAGGNTCCCTNTGCTTCCCAAGCTTCCAAANTCCTGAAATGCCTTTCA
NAGACACATATGGNCCCAGTGCTACTCATTTATGGAATTGCTATAAAAGT
TGACAGNTGGTAAATCGTTACCTTGCTCTCATTTTTAGAAGNAANAGACT
TCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_g24.g1 MSMg01no289_g24.g1 CHROMAT_FILE:
MSMg01no289_g24.g1 PHD_FILE: MSMg01no289_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:45 2005
         (288 letters)



>mm_chr8_16074679_16075366
          Length = 688

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaaatgccctgcagtttattcttagtgttgttgtgcaccttccgtaccccgacgaagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||
Sbjct: 488 cctaaatgccctgcagtttattcttagtgttgttgtgcaccttccgtagcaggacgaagt 429

                                                                       
Query: 61  agaaggccacacacatgcctcttagatggatggtggcaaaggttgatgcatgggtttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agaaggccacacacatgcctcttagatggatggtggcaaaggttgatgcatgggtttctc 369

                                                                       
Query: 121 attctctcccagtaatttggcatgagtttttacccactctaggctctgtgagaccccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attctctcccagtaatttggcatgagtttttacccactctaggctctgtgagaccccata 309

                                                                       
Query: 181 aagaagcactcagcctctcactcaacacaggggcgtggcagggtcggtgggggcgtggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aagaagcactcagcctctcactcaacacaggggcgtggcagggtcggtgggggcgtggtg 249

                                                           
Query: 241 gggagggccagttcgtgagggtttcctttctccctcacctgccttcca 288
           |||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 248 gggagggccagggcgtgagggtttcctttctccctcacctgccttcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)