BAC Information

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BAC

Clone NameMSMg01-290B03
Chromosome8 (Build37)
Map Location 43,867,653 - 44,025,825
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290B03.T7 (MSMg01no290_b03.b1)MSMg01-290B03.TJ (MSMg01no290_b03.g1)
ACCAG419451AG419452
length733736
length of high quality
(start - end)		597 (45 - 641)651 (76 - 726)
definitionCHROMAT_FILE: MSMg01no290_b03.b1 PHD_FILE: MSMg01no290_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:31 2005CHROMAT_FILE: MSMg01no290_b03.g1 PHD_FILE: MSMg01no290_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,867,653 - 43,868,245)(44,025,175 - 44,025,825)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAAACAGCTGTACTTGTTTCAAGGAAACTTTATTACTTAAAAATG
TGCACAGATCTGATCTAATCATGCTTATCCAATCTGTAAATCCAATCAAC
ATTGCAATTAGCATCGCTTTTTAATTATTTCTAAATAGAGGTCCTGTGCA
TAGAATATTCCGTAATGTTATTCATGTCATTATCTATTATTGTTCCATCC
TTGAAAGAAACTGGATAAATCCATAGTCATAAAATAATGCTACATGCCAG
AAATAAGTATGAATGACCACCAAACCAAATGCAAAGTGAGTGGCATGCTT
AAATGTAATTATTCTAAGAGTGGATATCTAAGTCTGACTTAATAAAATGA
GTGTGTTATTTAAAAGATGTACTTATGCATTTATGGTCATCAGAATTAAG
TATTGTAGGCTTCTTTTAACAAAGTAAAAGTTAATGGCTTCCTTGAAGTA
AGAATAACATGATTCACTATCAATAAAGTGCCCTTTGGTGCAGACCATTT
ATAAGAGAGAATAAGGAGCCAACATGATTTCTCAATGACTTTTCATTAGA
TGACTCAGGTATCATAAAAGAGAAATTATACATCTTTGAAATTTACAAGT
CTGTCAAAGTGGGACCTTGTCAATTTAATATGTATTTGACTACATTTAAT
TTCTATTAGAATTTATTAGCTAGAGATGATAAN

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGTGCTTCTAGAAGGTTCATTAA
AAAAAAATCGATAGCAAAATATTTACAGTGTTCCTGCTCTTGCGGAGTAG
TGTGATCCTTCTCTTGAAAAGTATAGGTAACAGTGAATAAAAATCGCTAG
TGACTTCCCCGTAGCTTTAGCTATGCAGTTTATTTTAATGACAGATGTGT
TCTTATTTGTTTTTTCTCTGGATGGGTCAATAGGAAGAGAATATAATTCC
CTGATATATTCTTCTATTTAGTGTCTATATTAAGCCAAAGTTAAAAATGT
GTTTGAGCAATCTAAAGCTCATGACAATTATCAAGAAAAATAAGATTATT
AATATTTCTAGTCCACTGGATCCTAAAATCAGCCTGGAGGCAGAATAAAA
ACTATGAGCCCAGTTCTTATACTATATAATCCTGCAGAGGCACAAACTCA
TTAAACAGTTTTGCTTTAATAACCTTAGGATGTCTTTCTGTAGACTAAAC
ACTTAATATTAAATAGTTCATAGAGGAAATTAGGAGACAGAGGANAATTC
AAGACTGACTACAAAATGTGGAGATGTAAACTAATATTACTAATAGAAAA
AATTACAATGTTATTATAGAATGAGCTTAAGGCTGTAGATATAGATCACC
AGAAATGCCAAACTCTATATTTTACAATTAAAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_b03.b1 MSMg01no290_b03.b1 CHROMAT_FILE:
MSMg01no290_b03.b1 PHD_FILE: MSMg01no290_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:31 2005
         (597 letters)



>mm_chr8_43867449_43868445
          Length = 997

 Score = 1139 bits (589), Expect = 0.0
 Identities = 592/593 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaaacagctgtacttgtttcaaggaaactttattacttaaaaatgtgcacaga 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaaacagctgtatttgtttcaaggaaactttattacttaaaaatgtgcacaga 264

                                                                       
Query: 65  tctgatctaatcatgcttatccaatctgtaaatccaatcaacattgcaattagcatcgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgatctaatcatgcttatccaatctgtaaatccaatcaacattgcaattagcatcgct 324

                                                                       
Query: 125 ttttaattatttctaaatagaggtcctgtgcatagaatattccgtaatgttattcatgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttaattatttctaaatagaggtcctgtgcatagaatattccgtaatgttattcatgtc 384

                                                                       
Query: 185 attatctattattgttccatccttgaaagaaactggataaatccatagtcataaaataat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attatctattattgttccatccttgaaagaaactggataaatccatagtcataaaataat 444

                                                                       
Query: 245 gctacatgccagaaataagtatgaatgaccaccaaaccaaatgcaaagtgagtggcatgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctacatgccagaaataagtatgaatgaccaccaaaccaaatgcaaagtgagtggcatgc 504

                                                                       
Query: 305 ttaaatgtaattattctaagagtggatatctaagtctgacttaataaaatgagtgtgtta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaaatgtaattattctaagagtggatatctaagtctgacttaataaaatgagtgtgtta 564

                                                                       
Query: 365 tttaaaagatgtacttatgcatttatggtcatcagaattaagtattgtaggcttctttta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttaaaagatgtacttatgcatttatggtcatcagaattaagtattgtaggcttctttta 624

                                                                       
Query: 425 acaaagtaaaagttaatggcttccttgaagtaagaataacatgattcactatcaataaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaagtaaaagttaatggcttccttgaagtaagaataacatgattcactatcaataaag 684

                                                                       
Query: 485 tgccctttggtgcagaccatttataagagagaataaggagccaacatgatttctcaatga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgccctttggtgcagaccatttataagagagaataaggagccaacatgatttctcaatga 744

                                                                
Query: 545 cttttcattagatgactcaggtatcataaaagagaaattatacatctttgaaa 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttttcattagatgactcaggtatcataaaagagaaattatacatctttgaaa 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_b03.g1 MSMg01no290_b03.g1 CHROMAT_FILE:
MSMg01no290_b03.g1 PHD_FILE: MSMg01no290_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:31 2005
         (651 letters)



>mm_chr8_44024975_44026025
          Length = 1051

 Score = 1245 bits (644), Expect = 0.0
 Identities = 649/651 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtgcttctagaaggttcattaaaaaaaaatcgatagcaaaatatttacagtgttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 caggtgcttctagaaggttcattaaaaaaaaatcgatagcaaaatatttacagtgttcct 792

                                                                       
Query: 61  gctcttgcggagtagtgtgatccttctcttgaaaagtataggtaacagtgaataaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gctcttgcggagtagtgtgatccttctcttgaaaagtataggtaacagtgaataaaaatc 732

                                                                       
Query: 121 gctagtgacttccccgtagctttagctatgcagtttattttaatgacagatgtgttctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gctagtgacttccccgtagctttagctatgcagtttattttaatgacagatgtgttctta 672

                                                                       
Query: 181 tttgttttttctctggatgggtcaataggaagagaatataattccctgatatattcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tttgttttttctctggatgggtcaataggaagagaatataattccctgatatattcttct 612

                                                                       
Query: 241 atttagtgtctatattaagccaaagttaaaaatgtgtttgagcaatctaaagctcatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atttagtgtctatattaagccaaagttaaaaatgtgtttgagcaatctaaagctcatgac 552

                                                                       
Query: 301 aattatcaagaaaaataagattattaatatttctagtccactggatcctaaaatcagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aattatcaagaaaaataagattattaatatttctagtccactggatcctaaaatcagcct 492

                                                                       
Query: 361 ggaggcagaataaaaactatgagcccagttcttatactatataatcctgcagaggcacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggaggcagaataaaaactatgagcccagttcttatactatataatcctgcagaggcacaa 432

                                                                       
Query: 421 actcattaaacagttttgctttaataaccttaggatgtctttctgtagactaaacactta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actcattaaacagttttgctttaataaccttaggatgtctttctgtagactaaacactta 372

                                                                       
Query: 481 atattaaatagttcatagaggaaattaggagacagagganaattcaagactgactacaaa 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 371 atattaaatagttcatagaggaaattaggagacagaggaaaattcaagactgactacaaa 312

                                                                       
Query: 541 atgtggagatgtaaactaatattactaatagaaaaaattacaatgttattatagaatgag 600
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 311 atgtggagatgtaaactaatattactaatagaaaaaattaaaatgttattatagaatgag 252

                                                              
Query: 601 cttaaggctgtagatatagatcaccagaaatgccaaactctatattttaca 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cttaaggctgtagatatagatcaccagaaatgccaaactctatattttaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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