Query= MSMg01no290_f11.b1 MSMg01no290_f11.b1 CHROMAT_FILE:
MSMg01no290_f11.b1 PHD_FILE: MSMg01no290_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:51 2005
(588 letters)
>mm_chr8_16105303_16106290
Length = 988
Score = 611 bits (316), Expect = e-179
Identities = 349/360 (96%)
Strand = Plus / Minus
Query: 5 gaattcagaatatgccatttctgactgtgataaaagcttgtttatggtaggacaatgcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 360 gaattcagaatatgccatttctgactgtgataaaagcttgtttatggtaggacaacacta 301
Query: 65 atcctgctgtcctgcagagacgcagagcaaggggtctcagtggagacctggacagttgct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atcctgctgtcctgcagagacgcagagcaaggggtctcagtggagacctggacagttgct 241
Query: 125 catcttacctgaccagattctatcaatatttaggaaagtgttattgttatcttgatataa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 catcttacctgaccagattctatcaatatttaggaaagtgttattgttatcttgatataa 181
Query: 185 cctggaatcacttggaaaatagaaacctcaagtgagaatctatgcacctcagatgggcct 244
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 180 cctggaatcacttcgaaaatagaaacctcaaatgagaatctatacacctcagatgggcct 121
Query: 245 aggcagagaacattgaaagagagtgccataattgataattgatgtgggagtgcccagcca 304
||||||||| || ||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 120 aggcagagagcactgaaagagattgtcataattgataattgatgtgggagtgcccagcca 61
Query: 305 actggacaaaactatccctaggcagaaagctaattgagcgtgacccagaggtggagctag 364
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 60 actggacaacactatccctaggcagaaagctaattgagcatgacccagaggtggagctag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_f11.g1 MSMg01no290_f11.g1 CHROMAT_FILE:
MSMg01no290_f11.g1 PHD_FILE: MSMg01no290_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:52 2005
(566 letters)
>mm_chr8_16012332_16013297
Length = 966
Score = 959 bits (496), Expect = 0.0
Identities = 555/590 (94%), Gaps = 24/590 (4%)
Strand = Plus / Plus
Query: 1 catggttgaacctctctgtggatggcaatttataaaaatgctaatgctgagctgccggcc 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 201 catggttgaacctctctgtggatggcaatttataaaaatgctaaagctgagctgttggcc 260
Query: 61 ccacttgcctttacacattattatgtgtgcaattctgtagtgtctctaaggagcctggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacttgcctttacacattattatgtgtgcaattctgtagtgtctctaaggagcctggaa 320
Query: 121 gcatcctcagtgaccaagagtgagaaaacatgaattagaagagattctagaacctcactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatcctcagtgaccaagagtgagaaaacatgaattagaagagattctagaacctcactc 380
Query: 181 atctcaaaagaccccttggtcatggactagagtggggaaggagcttcaaagaagagtagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 atctcaaaagaccccttggtcatggactagagtggggaaggagcttcaaagaagaatagg 440
Query: 241 gaaatccaaagtgttggtcaaaaaagcccagagtagcatagggtacgagccatctaatga 300
||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct: 441 gaaatccaaagtgttggtcaaaaaagcccagagtagcgtagggaacgagccatccaatga 500
Query: 301 agcacgtgccctgcacaagaaaacagatgtgaagaaaaggagccctgctcagaaagacat 360
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcaggtgccctgcacaagaaaacagatgtgaagaaaaggagccctgctcagaaagacac 560
Query: 361 atcttgtacattttctctcttatgcagaatctagacttaatatatatatttatatattgt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 atcttgtacattttctctcttatgcagaatctagacttaatatatatatttatatattat 620
Query: 421 ttattatttttatatttaataattataacatttatatttatatttaatatttatattatt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 ttattatttttatatttaataattataacatttatatttatatttaatatttatcttatt 680
Query: 481 tataataatttaataaattaaatatatacaataatttcatatatat-------------- 526
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tataataatttaataaattaaatatatacaataatttcatatatatatgtatatgtacat 740
Query: 527 ----------gaaaaacctcttggtcaagatattaggctctctggcctgg 566
||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatatatatgaaaaacctcttggtcaagatattaggctctctggcctgg 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
