BAC Information

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BAC

Clone NameMSMg01-290K01
Chromosome8 (Build37)
Map Location 47,896,248 - 47,896,887
singlet/doubletsinglet
Overlap geneIrf2
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3
Downstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K01.T7 (MSMg01no290_k01.b1)MSMg01-290K01.TJ (MSMg01no290_k01.g1)
ACCAG419853AG419854
length747749
length of high quality
(start - end)
645 (46 - 690)239 (128 - 366)
definitionCHROMAT_FILE: MSMg01no290_k01.b1 PHD_FILE: MSMg01no290_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:14 2005CHROMAT_FILE: MSMg01no290_k01.g1 PHD_FILE: MSMg01no290_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGTACTCTCCCGTGTGATTGTCTCATATTTAGTATGTTCACAG
CATTCAGTGACTAGCATAGAGCAAACTATACATATCTGATAACTGAGTGG
GAGCATGAACATTTATTAAAAAACGCAGATATATTTATTCTGTATGGTGG
GAGTCAGGGGCTTTACAGTACAGATTTAATTTCATAATTGCAGCGAGTAG
AAAAACAACAGCAGAATAACATTTACTTTTCACTATATTTTCCCCACATG
TAACCACTATATTCCATTCAGTATCAAATACCAAAGGTTATATGGCTGGC
CGTTACGTTATGTCTCTTTAAGACAGACACACTACTTCCGGTGAAGCAGT
GAAGGCTGAGACATGCAGCATCCCGGGGCTGTAGGAATGTAAGGAAATGT
GCTTCCTAGGGTGGGTGGCATGTGGGGGTCCTCGTAAGAAAAGGGTAGCT
TTGGTTACATCAGCCTTGTGGGGCCACTAAAATGTGGTAGGCACAGCCCT
GGTGAGACTTAGCCATGTTCATCCAGGAAGTGAGCGGCCTTAAATGAAGC
CACGTGGGTGGAGCTCCTGCTTAGGAGCATCTGTTATGAAATCCTTGTGT
AACAAAGCTATGATTAACACTGTGTTCCTCAAGGGACATTGTTCCTTCAG
CCGGAAGCTGATGAATCATACTTAGTGCAGCCTAACCTTTGGATGTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTCTAGTCACTCCCATTCTCGG
GGTGTAATAGTGGGGTGATTTTCACCCAATGAATCAGGAGCTGTCACACC
ATATCAGGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGCGCCATAT
TCCCGGTTCGGAATCTTCCTGAGAAGCAAGCAATAAAGCTCTTGCCGCGG
AAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGGACGCAATAG
ATGGACTGACTGGCTGCCAGAAATAACGTCAAATGTGGAAAATAAGTGGA
GTGGAGAGACCTGGTATGTATGGCACGCCCACCATGAGATGGCCACAATA
ATAAGGCATGCCTCTGGGTACTCATGGGTGTTCGAAGATGGGAGTAGATA
CTGAGGGTGATCTTCTAGTCAAGTCTTTGATGCCCGATGGATTTTGATAG
GAACTATGGGTTGGGAAGCCTGGTTGTAGTAAGTGTGTTACTAGGGTGTG
TGTCTTTGAGGGTACATCTTCTCTTGGCTCCTTTCCATCTCTGCTCTGCT
TTGCGGGTGCCATGAGTTGAAGACCCTATTTATCATGATGTATGGAAATT
CTGCTACTGCCAGCTAAATAAGTCCTTCCCTCCTTTAAGTGTCAGGCGTT
TTTGTCACATTGTGCATAAGTGACTGGAAAGCTCACTGATGAACTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k01.b1 MSMg01no290_k01.b1 CHROMAT_FILE:
MSMg01no290_k01.b1 PHD_FILE: MSMg01no290_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:14 2005
         (645 letters)



>mm_chr8_47896044_47897087
          Length = 1044

 Score = 1178 bits (609), Expect = 0.0
 Identities = 633/641 (98%), Gaps = 1/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtactctcccgtgtgattgtctcatatttagtatgttcacagcattcagtg 64
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtactcttaggtgtgattgtctcatatttagtatgttcacagcattcagtg 264

                                                                       
Query: 65  actagcatagagcaaactatacatatctgataactgagtgggagcatgaacatttattaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actagcatagagcaaactatacatatctgataactgagtgggagcatgaacatttattaa 324

                                                                       
Query: 125 aaaacgcagatatatttattctgtatggtgggagtcaggggctttacagtacagatttaa 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaa-cgcagatatatttattctgtatggtgggagtcaggggctttacagtacagatttaa 383

                                                                       
Query: 185 tttcataattgcagcgagtagaaaaacaacagcagaataacatttacttttcactatatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttcataattgcagcgagtagaaaaacaacagcagaataacatttacttttcactatatt 443

                                                                       
Query: 245 ttccccacatgtaaccactatattccattcagtatcaaataccaaaggttatatggctgg 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttccccacacgtaaccactatattccattcagtatcaaataccaaaggttatatggctgg 503

                                                                       
Query: 305 ccgttacgttatgtctctttaagacagacacactacttccggtgaagcagtgaaggctga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 ccgttacgttatgtctctttaagacagacacactacttccggtgaagcagtcaaggctga 563

                                                                       
Query: 365 gacatgcagcatcccggggctgtaggaatgtaaggaaatgtgcttcctagggtgggtggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gacatgcagcatcccggggctgtaggaatgtaaggaaatgtgcttcctagggtgggtggc 623

                                                                       
Query: 425 atgtgggggtcctcgtaagaaaagggtagctttggttacatcagccttgtggggccacta 484
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 624 atgtgggggtcctcgtaagaaaagggtagctttggttacatcagcctcgtggggccacta 683

                                                                       
Query: 485 aaatgtggtaggcacagccctggtgagacttagccatgttcatccaggaagtgagcggcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaatgtggtaggcacagccctggtgagacttagccatgttcatccaggaagtgagcggcc 743

                                                                       
Query: 545 ttaaatgaagccacgtgggtggagctcctgcttaggagcatctgttatgaaatccttgtg 604
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 744 ttaaatgaagccacgtgggtggagctcctgctcaggagcatctgttatgaaatccttgtg 803

                                                    
Query: 605 taacaaagctatgattaacactgtgttcctcaagggacatt 645
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 taacaaagctatgattaacactgtgttcctcaagggacatt 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space:   656590
Effective search space used:   656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)