MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-290N16
Chromosome	8 (Build37)
Map Location	63,716,400 - 63,716,639
singlet/doublet	singlet
Overlap gene	Sh3rf1
Upstream gene	Aadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
Downstream gene	EG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
Link	Open Mouse BAC browser

Click to get alignment info.

name	Aadat (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23923 MGI:1345167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mfap3l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71306 MGI:1918556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040679 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040679
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	2700029M09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72612 MGI:1919862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 121 ESTs, 2 Proteins

name	Clcn3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12725 MGI:103555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	B230317F23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320383 MGI:2443920
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs

name	Nek1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18004 MGI:97303
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sh3rf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59009 MGI:1913066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG664975 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664975 MGI:3645713
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 585 ESTs, 8 Proteins pseudo : _no_value

name	Cbr4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234309 MGI:2384567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Palld (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72333 MGI:1919583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040872 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040872
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs

name	BC013672 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234311 MGI:2384570
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Anxa10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26359 MGI:1347090
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040775 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040775
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Aadat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130028 GeneID:23923 MGI:1345167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aminoadipate aminotransferase transcript_id : NM_011834.2

name	Mfap3l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130394 GeneID:71306 MGI:1918556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : microfibrillar-associated protein 3-like transcript_id : NM_027756.3

name	2700029M09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149258776 GeneID:72612 MGI:1919862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 121 ESTs, 2 Proteins product : RIKEN cDNA 2700029M09 gene transcript_id : XM_001474993.1

name	Clcn3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71143117 GeneID:12725 MGI:103555
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chloride channel 3 transcript_id : NM_007711.2

name	Clcn3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71061478 GeneID:12725 MGI:103555
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chloride channel 3 transcript_id : NM_173876.2

name	Nek1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124107626 GeneID:18004 MGI:97303
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NIMA (never in mitosis gene a)-related expressed kinase 1 transcript_id : NM_175089.3

name	Sh3rf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145506 GeneID:59009 MGI:1913066
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH3 domain containing ring finger 1 transcript_id : NM_021506.2

name	Cbr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704189 GeneID:234309 MGI:2384567
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbonyl reductase 4 transcript_id : NM_145595.1

name	Palld (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487060 GeneID:72333 MGI:1919583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : palladin, cytoskeletal associated protein transcript_id : NM_001081390.1

name	LOC100040872 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258780 GeneID:100040872
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs product : similar to CG2839-PA transcript_id : XM_001475360.1

name	BC013672 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487048 GeneID:234311 MGI:2384570
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC013672 transcript_id : NM_001081215.1

name	Anxa10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753057 GeneID:26359 MGI:1347090
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : annexin A10 transcript_id : NM_011922.1

name	Aadat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754408 CCDS:CCDS22320.1 GeneID:23923 MGI:1345167
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0047536 - 2-aminoadipate transaminase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016212 - kynurenine-oxoglutarate transaminase activity [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016769 - transferase activity, transferring nitrogenous groups [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA] codon_start : 1 note : kynurenine aminotransferase II product : aminoadipate aminotransferase protein_id : NP_035964.1

name	Mfap3l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29788792 CCDS:CCDS22321.1 GeneID:71306 MGI:1918556
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : microfibrillar-associated protein 3-like protein_id : NP_082032.1

name	2700029M09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149258777 GeneID:72612 MGI:1919862
definition	codon_start : 1 product : hypothetical protein LOC72612 protein_id : XP_001475043.1

name	Clcn3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41281837 CCDS:CCDS22322.1 GeneID:12725 MGI:103555
definition	GO_component : GO:0009986 - cell surface [Evidence ISS]; GO:0005769 - early endosome [Evidence ISS]; GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0005770 - late endosome [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0012506 - vesicle membrane [Evidence ISS] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030165 - PDZ domain binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence IEA]; GO:0048388 - endosomal lumen acidification [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006885 - regulation of pH [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant c product : chloride channel 3 isoform c protein_id : NP_776301.1

name	Clcn3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680948 CCDS:CCDS22323.1 GeneID:12725 MGI:103555
definition	GO_component : GO:0009986 - cell surface [Evidence ISS]; GO:0005769 - early endosome [Evidence ISS]; GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0005770 - late endosome [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0012506 - vesicle membrane [Evidence ISS] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030165 - PDZ domain binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence IEA]; GO:0048388 - endosomal lumen acidification [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006885 - regulation of pH [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant a product : chloride channel 3 isoform a protein_id : NP_031737.1

name	Nek1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124107627 GeneID:18004 MGI:97303
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence ISS]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IMP]; GO:0010212 - response to ionizing radiation [Evidence IMP] codon_start : 1 note : NY-REN-55 antigen; kidney, anemia and testis; Nek1 serine/threonine- and tyrosine-specific protein kinase product : NIMA (never in mitosis gene a)-related expressed kinase 1 protein_id : NP_780298.2

name	Sh3rf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145507 GeneID:59009 MGI:1913066
definition	GO_component : GO:0030027 - lamellipodium [Evidence IDA] GO_function : GO:0005078 - MAP-kinase scaffold activity [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0046328 - regulation of JNK cascade [Evidence IDA] codon_start : 1 note : plenty of SH3 domains product : SH3 multiple domains 2 protein_id : NP_067481.2

name	Cbr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704190 GeneID:234309 MGI:2384567
definition	GO_function : GO:0004316 - 3-oxoacyl-[acyl-carrier protein] reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : carbonic reductase 4 protein_id : NP_663570.1

name	Palld (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487061 GeneID:72333 MGI:1919583
definition	GO_component : GO:0005884 - actin filament [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0051371 - muscle alpha-actinin binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS]; GO:0005021 - vascular endothelial growth factor receptor activity [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : 90kDa actin-associated protein palladin product : palladin protein_id : NP_001074859.1

name	LOC100040872 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258781 GeneID:100040872
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475410.1

name	BC013672 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487049 GeneID:234311 MGI:2384570
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC234311 protein_id : NP_001074684.1

name	Anxa10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753058 GeneID:26359 MGI:1347090
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005544 - calcium-dependent phospholipid binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : annexin A10 protein_id : NP_036052.1

name	LOC100040679 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040679
definition	number : 1 pseudo : _no_value

name	LOC100040679 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040679
definition	number : 2 pseudo : _no_value

name	LOC100040775 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040775
definition	number : 3 pseudo : _no_value

name	LOC100040775 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040775
definition	number : 2 pseudo : _no_value

name	LOC100040775 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040775
definition	number : 1 pseudo : _no_value

name	B230317F23Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149258773 GeneID:320383 MGI:2443920
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs product : RIKEN cDNA B230317F23 gene transcript_id : XR_035255.1

name	EG664975 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149258779 GeneID:664975 MGI:3645713
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 585 ESTs, 8 Proteins product : predicted gene, EG664975 pseudo : _no_value transcript_id : XR_001689.2

clone name	MSMg01-531L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178M15
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-290N16.T7 (MSMg01no290_n16.b1)	MSMg01-290N16.TJ (MSMg01no290_n16.g1)
ACC	AG420019	AG420020
length	725	730
length of high quality (start - end)	679 (47 - 725)	246 (76 - 321)
definition	CHROMAT_FILE: MSMg01no290_n16.b1 PHD_FILE: MSMg01no290_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:30 2005	CHROMAT_FILE: MSMg01no290_n16.g1 PHD_FILE: MSMg01no290_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:30 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCTTTGTTTTCCTCTGAAGCCCAATTTTTAATGGGGTTATTTGAAT TTCTGGAGTCCAGCTTCTTGAGCTCTTTATATATATATTGGATATTAGTC CCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGC CTTTTTGTCTTACTGCCAGTAGCAATCTACACATTCAATACAATTCCCAT CAAAATTCCAGCTCAATTCTTCACTGAGATAAAAAAGGACAATTTGCAAA TTTATCTGGAATAATAAAAAAACCTAGGATAGCAAAAAGTATTCTCAACA ATAAAAGAACCAACTTTGCTTTTTATTGACTCACTAAATCCATCTAGCAT TGCCCCTATGTGCCCATGTGGGGCCTTCTAGTGGAGCATGGGAAACCTAG CTTCAATAAAGAGTCTCTTCACCTGCCAATAGTTCCTCACCAAGGGGTAG AGTAGGGCCTGGAGAGATCATTTATGCCTACATGATTTTACAAAGGTATT GTGTGGGTAGCCACAGCTGCTGTGAGTTCATGAATTCTACAGCCATGTCA ATCCACAGCAGAGGCTAACCACCTCTCTATTGCTGCAACCCTTTAATACA GTTCCTCATACAAGTATTTCTGTTGCTACTTCATAACTGTAATTCTGCTG TTATGAGTCAGAATATAATATCTGG	CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXTTGGACTTTCCATTCGAAGTCAGCC ATTATTGGATTAGCTTGGATTACCTGGACTGCACCCTGTAAAGTCATTTC AATAAATTCCAATACACATAGGGAGTGGTGGGAGGGGAGGGGAGGGGAGA AAAGGACCAAAATACAGAGTATTCGACAACAAACTCCTTTTTTCTGCACA ACTCTCAATGGGTCAATGGGTTGGGACACACACTACCTTTAATATAATAA AAACATTTCTGTTCATGGTGTTTTTTTTTTTAATTCAAAGGCGCCCNTTA TTACATTATTTTANGTGCCTCCGAAACCCGAGACCCTTTATTTATTTTTA TTAATTGTTTGTTTGTATAGGTTAAAAAATTAGGGAAAAAAGCGCGGGGG GGGGGAGGGTTCGTTTTCTTTTCCAGAGGATCGGAGTTCTATCTCTAGCA CTCACGGCAAATGGCTAAAAACTGACTGACGGCCCTCCTATCCATGATGC ATATGCATGCCCACACACACATTGTGCTTAACTATAATGCTTTTATACAT GCATCTTCAGGAGGTAAATCTGTAAGAACTTATTTCCCTTAAGCTATTGG CCACACCCACAAATTATTCTGTCCCTGTTGCTTTGCTCCAAATTTCATGT GGCTTGAAATTCCTCTTTGTCCCCACATTG
quality values	Open. Hide. 6 6 6 8 8 8 10 12 16 27 37 43 37 37 37 31 20 19 9 9 9 19 19 37 44 59 27 24 19 19 18 23 21 11 9 9 9 9 17 25 34 28 28 26 28 28 35 41 57 57 36 36 36 31 44 33 59 59 59 59 27 21 11 11 11 11 11 12 25 24 39 39 39 37 41 47 36 50 50 59 59 59 57 53 53 50 50 50 57 59 57 57 57 53 68 68 68 68 68 68 68 51 68 68 68 68 68 68 51 51 51 51 51 51 68 68 68 68 57 57 27 27 12 19 18 37 37 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 44 44 35 35 39 44 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 43 43 31 31 35 39 41 43 21 21 35 43 44 62 52 52 45 45 45 52 43 43 31 43 43 62 43 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 52 42 42 39 43 57 59 59 59 57 57 57 57 57 57 57 68 57 57 57 57 59 57 57 68 57 57 57 57 57 59 59 59 59 59 68 68 68 68 68 68 68 57 57 59 57 57 57 57 57 52 52 52 59 59 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 54 54 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 68 59 59 57 57 57 57 57 57 57 57 57 57 57 68 68 68 57 57 48 48 48 57 57 57 57 57 57 59 54 54 59 59 59 48 59 48 48 48 59 59 59 59 59 59 59 59 59 59 59 48 57 57 57 57 57 59 59 59 59 47 47 37 37 30 30 28 32 32 59 43 41 41 44 59 33 29 24 22 22 27 37 41 41 41 41 39 43 34 30 28 30 28 39 35 31 31 36 34 41 37 37 43 59 41 41 41 41 40 43 47 47 37 37 37 37 32 30 37 44 39 39 41 40 41 41 41 30 19 16 14 14 19 24 39 36 36 33 37 32 26 28 37 39 41 37 37 44 59 43 35 30 30 30 30 36 37 32 30 31 30 30 22 20 20 24 27 27 32 27 27 27 29 32 37 30 24 24 23 18 22 34 34 39 39 40 37 37 30 19 16 18 21 25 37 39 47 41 41 39 18 11 11 11	Open. Hide. 6 6 8 8 15 19 9 9 9 9 21 21 22 10 10 10 21 34 39 39 41 42 50 50 50 50 50 47 47 22 22 10 9 9 9 8 8 8 8 10 11 19 19 32 23 28 23 25 11 11 11 21 21 39 39 41 25 23 10 9 10 9 9 9 17 15 18 18 18 15 22 32 32 36 36 53 53 53 53 53 57 57 57 50 50 47 47 47 47 59 57 59 68 51 47 47 42 42 47 53 50 50 53 57 57 57 50 53 53 38 38 36 53 44 44 39 33 33 22 23 18 22 24 27 34 36 39 41 41 50 50 50 50 53 53 59 59 57 57 57 50 50 50 53 50 50 50 53 53 53 53 53 68 51 51 51 47 47 47 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 68 57 57 47 47 44 50 44 44 43 57 57 57 54 54 57 57 57 57 57 50 48 48 57 50 50 37 43 43 50 59 59 68 68 68 68 68 57 57 57 47 47 47 47 47 43 43 36 32 26 18 13 13 24 32 30 35 35 44 44 37 43 39 44 47 59 59 41 37 37 48 43 43 43 59 43 43 43 57 57 57 59 54 48 48 43 43 43 43 43 59 59 48 48 48 48 48 48 48 57 57 57 59 59 43 40 37 37 37 37 37 25 23 10 10 12 12 18 15 11 8 8 7 8 8 11 23 34 32 41 40 46 36 21 19 8 6 6 8 8 3 0 3 8 8 8 8 8 19 19 15 9 10 6 7 7 6 3 0 3 7 6 6 6 8 8 6 3 3 3 3 3 7 6 6 6 6 6 6 7 6 6 8 8 8 8 8 9 11 23 22 15 10 9 9 13 7 9 10 10 15 10 10 8 8 6 6 15 8 8 8 8 8 6 6 7 7 8 8 8 9 7 7 6 6 6 7 8 9 9 12 19 22 14 13 8 7 7 8 8 11 20 24 20 25 22 12 11 13 11 10 10 10 10 10 8 15 8 6 6 8 16 11 9 9 9 23 23 19 13 13 12 15 15 11 12 12 15 13 15 18 17 11 11 11 11 21 11 13 13 18 13 13 18 18 18 8 8 6 8 11 8 6 6 8 8 13 10 10 10 10 14 11 12 12 11 12 11 12 15 28 28 28 13 13 13 19 18 12 12 14 19 19 19 14 13 10 8 8 10 13 9 14 18 18 16 11 11 11 16 11 15 11 14 9 9 9 9 8 8 9 10 8 8 12 8 8 12 10 8 8 8 9 10 9 10 10 10 9 9 9 12 12 11 11 11 11 11 11 15 11 10 10 8 8 8 8 8 8 15 15 8 8 8 8 10 11 11 9 9 8 8 8 8 8 10 8 8 8 10 13 12 13 13 13 21 15 14 14 13 15 12 15 15 12 10 10 10 10 10 13 16 15 12 11 8 8 8 8 8 8 15 15 15 12 11 10 10 10 8 8 10 15 12 10 9 9 9 11 12 11 8 8 8 10 8 8 10 8 9 9 9 9 9 8 8 6 7 8 8 8 8 11 12 10 10 11 11 17 12 10 10 10 8 8 8 8 8 8 10 10 13 6 6 6 8 10 10 13 9 6 6 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no290_n16.g1 MSMg01no290_n16.g1 CHROMAT_FILE:
MSMg01no290_n16.g1 PHD_FILE: MSMg01no290_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:30 2005
         (246 letters)



>mm_chr8_63716076_63716721
          Length = 646

 Score =  424 bits (219), Expect = e-123
 Identities = 237/245 (96%), Gaps = 5/245 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggactttccattcgaagtcagccattattggattagcttggattacctggactgcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 ttggactttccattcgaagtcagccattattggattagcttggattagctggactgcacc 505

                                                                       
Query: 61  ctgtaaagtcatttcaataaattccaatacacatagggagtggtgggaggggaggggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  
Sbjct: 504 ctgtaaagtcatttcaataaattccaatacacatagggagtggtgggagggga-ggga-- 448

                                                                       
Query: 121 ggagaaaaggaccaaaatacagagtattcgacaacaaactccttttttctgcacaactct 180
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 --agaaaaggaccacaatacagagtattcgacaacaaactccttttttctgcacaactct 390

                                                                       
Query: 181 caatgggtcaatgggttgggacacacactacctttaatataataaaaacatttctgttca 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caatgggtcaatgggttaggacacacactacctttaatataataaaaacatttctgttca 330

                
Query: 241 tggtg 245
           |||||
Sbjct: 329 tggtg 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information