BAC Information

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BAC

Clone NameMSMg01-291D12
Chromosome8 (Build37)
Map Location 85,511,621 - 85,511,902
singlet/doubletsinglet
Overlap geneRnf150
Upstream geneInpp4b, LOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
Downstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291D12.T7 (MSMg01no291_d12.b1)MSMg01-291D12.TJ (MSMg01no291_d12.g1)
ACCAG420279AG420280
length738746
length of high quality
(start - end)
240 (114 - 353)282 (74 - 355)
definitionCHROMAT_FILE: MSMg01no291_d12.b1 PHD_FILE: MSMg01no291_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:57 2005CHROMAT_FILE: MSMg01no291_d12.g1 PHD_FILE: MSMg01no291_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGCCCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGATGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCTTTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TTTGTTTTAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTCACCCCACCACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCAAACAAAGATCAAGTGACCATA
CGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCATTGTTCTACTT
GCCCGTCTCTATACCAGTACCCTGCCGTTTTTATCATAATTGCTCTGTAC
TATAGCTTTACGTTATGCTTGTTGCTTTCACCAGAGGTTCCTTTATCCTT
GATAAGAGCTTTTTGCTTTTCTAGGTTTCTTGTTATCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGCTTGAGAGGCCATAGAGTGTAGCC
ATTAAGACTTGCTCTCTGGCAACAGACAGTGTGCTTTAATCCAGTATGGC
ACTTTAGAAATAGGCACTGAAAGTTTTGGATGCTGCAAAGCTCTAAATTA
TTCATTATCTTTTTCCAGGGATCTGAGAAAAACATTTTTCTCTTTCTGCA
GGGTATAATTAACTATTTTAAACTGTTTGTTTTAAACCTAAGTGCGTAGT
GAGTGCTTATTGTCTCTGCTTTTGTGGGGACTTCAGGACATACAACATCG
TCTGAAATGTAATGNAATCCCGNGCTGNCCCTGGACCATTCGCCTGGACA
GGAACCTTACTCCCCCCCGAAATAAAAAAAAAAATTCCAGGGATGAGGAT
GAAGAAAAGGGTGAGATTCTCAAAGCATTTCTCTTTGCACTTTACACTGT
ATACCGTGTAGAGAAAAGCCATACTGAGGATTTGGTTTTATCACAACGGG
AATAGTTATTGAAAACTGCATGCCTCCGGTCTTGAGATAATGCCCATTAC
TTATCAGCATTTGCCGCTTTTCTACCGGACCTGATTCCTGTTCCCGGCAC
CCCCCGAAGGTTCTCACAGTTGCCTATCACTCCTGTTTCCTTGTATCTGA
TGTGCCTCCCCAGCCCTCTGTGATTTCTCACTGTCCGTATCTTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_d12.g1 MSMg01no291_d12.g1 CHROMAT_FILE:
MSMg01no291_d12.g1 PHD_FILE: MSMg01no291_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:57 2005
         (282 letters)



>mm_chr8_85511421_85512102
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcttgagaggccatagagtgtagccattaagacttgctctctggcaacagacagtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atgcttgagaggccatagagtgtagccattaagacttgctctctggcaacagacagtgtg 423

                                                                       
Query: 61  ctttaatccagtatggcactttagaaataggcactgaaagttttggatgctgcaaagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctttaatccagtatggcactttagaaataggcactgaaagttttggatgctgcaaagctc 363

                                                                       
Query: 121 taaattattcattatctttttccagggatctgagaaaaacatttttctctttctgcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taaattattcattatctttttccagggatctgagaaaaacatttttctctttctgcaggg 303

                                                                       
Query: 181 tataattaactattttaaactgtttgttttaaacctaagtgcgtagtgagtgcttattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tataattaactattttaaactgtttgttttaaacctaagtgcgtagtgagtgcttattgt 243

                                                     
Query: 241 ctctgcttttgtggggacttcaggacatacaacatcgtctga 282
           ||||||   |||||||||||||||||||||||||||||||||
Sbjct: 242 ctctgcaactgtggggacttcaggacatacaacatcgtctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)