BAC Information

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BAC

Clone NameMSMg01-292H08
Chromosome8 (Build37)
Map Location 69,263,943 - 69,264,230
singlet/doubletsinglet
Overlap genenone
Upstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2, Npy5r, Npy1r
Downstream geneBC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292H08.T7 (MSMg01no292_h08.b1)MSMg01-292H08.TJ (MSMg01no292_h08.g1)
ACCAG421173AG421174
length779789
length of high quality
(start - end)
293 (72 - 364)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no292_h08.b1 PHD_FILE: MSMg01no292_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:32 2005CHROMAT_FILE: MSMg01no292_h08.g1 PHD_FILE: MSMg01no292_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGAGTATCCCAAGCCCCTCCTGAGTATGGGAGGCACCACTCCA
CTGGCTGGGATTCCAGACTGAATACTAAGGGAATAAGGATGCAGCCATCT
GAGCGTTGCCTTTCCTCGTTTTCTGCTCTCTGATGGGCACTGCAGAGCTA
CTTCCACTGCCGTGTCTTCTCTGATCTGAAGGACTATACTTATCTGAACT
CTGGGCACAAAATAAACTTTTCCTCCAGTAAGTTACTTTCATGAGCTATG
AGAAACATAACTATGATGGTTTGTTTGTGCTCGGCCCAGGAAGTGGCACT
GTTAGAATTTGTGTTCTTGTTACACCCACCCCCGCCACTGTGGGTGTGGA
CTATAAAGTCCTCACCCCACCTGCCTGAAAGAAAGAATTCTGATAGCAGC
CTTCAGGTGAATATGTAGAAGTCTCATCTGCACCTGCATCATGCCTGCCT
GGAAGCTGCCATGTTCTCATTTTGTTGATAATGATCTGCACCTTCTGAAC
CTGTTTTCCATTTTCAACTAACAGTTGCCCTTTTAAATAACTGACTTGGT
CATGCAATTTTTCTTCCCTGTGATATACTCCTCACTTTTATCCTCTTTTA
CTCTTACCCCATCCCTCTTCTCTCTCAGGTTGCCTATACCTACTGCTCTT
CATACATTTTTTTTTTGTCCCCTCTACCTTTTATCACCTTCTTTATACGT
CTCCCCCCTCTCCGTTCCCTGTTCCCTCC
CCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCTGAAAATTCCTATTTTACTTAGTACTCTAGGGATT
TTATTTTTGCACACAAGGCCAACCCAATGGTGTAGGCTTGAACCACAGCA
CAAAAGCATTTGCAAACTGACCCTTGTTTATTGTTATTTAATATCCTGCC
AATGCTTTAATATGCATGTTAAGGGAAACCCTATAAGGTTTATGAGAGGT
CTGTTGACTAGCTCAGCATAGGGTACTTGCCCAGCTACTTACACAATTCT
CTTCTCTGTGCTGCAATATTCATAGTTTATTTCCCTGATAAACCATTCTG
AGGGTGGCCTTTTTTTTTTTTCTCACCCCCCCCCCCATTCCCTCTTACTC
ATTTGTGGACCACACACACCGGAGAAAAATAAAAAACTCCAGGTCTTGCG
AAGAGCGTGTTGCTGAGAACGTATGGCGAGAAACATTATACATAAGGATC
CCAGCCCGGCTGTTCAAGAGTTCTCCTGTGTCCCGTCCCGTATCATCACA
GTTTATGATGACTACCTCATTATTCTCCTATTTCATCTTTATTGTTTCCT
CCTTCCTATTTTCCCTTACCCCCCTGTGGCGTAATTATCACTTCATATTT
CCCTCTATTCTTCCCTCTTTTCCTTCCATTTCCCATTTATCCTTTTCTTC
TCCCCTTTTCTCCTTTTCCAATTCTCCCCCTGCCCCTCTCACTAATCTCA
ACCCCCTTTTCCTTCCCTCTCTCCTTTCTACACCACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_h08.g1 MSMg01no292_h08.g1 CHROMAT_FILE:
MSMg01no292_h08.g1 PHD_FILE: MSMg01no292_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:32 2005
         (289 letters)



>mm_chr8_69263743_69264432
          Length = 690

 Score =  453 bits (234), Expect = e-132
 Identities = 275/292 (94%), Gaps = 9/292 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctattttacttagtactctagggattttatttttgcacacaaggccaacccaatggtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||
Sbjct: 488 tcctattttacttagtactctagggattttatttttgcacacaaggccaacaaaatgatg 429

                                                                       
Query: 61  taggcttgaaccacagcacaaaagcatttgcaaactgacccttgtttattgttatttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taggcttgaaccacagcacaaaagcatttgcaaactgacccttgtttattgttatttaat 369

                                                                       
Query: 121 atcctgccaatgctttaatatgcatgttaagggaaaccctataaggtttatgagaggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atcctgccaatgctttaatatgcatgttaagggaaaccctataaggtttatgagaggtct 309

                                                                       
Query: 181 gttgactagctcagcatagggtacttgcccagctacttacacaattctcttctctgtgct 240
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggcgactagctcagcatagggtacttgcccagctacttacacaattctcttctctgtgct 249

                                                               
Query: 241 gcaat-attcatag----tttatttccctgataaaccattctgagggtggcc 287
           ||||| |  || ||       ||||||| |||||||||||||||||||||||
Sbjct: 248 gcaataaagcaaagaaaa---atttccc-gataaaccattctgagggtggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)