BAC Information

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BAC

Clone NameMSMg01-292J20
Chromosome8 (Build37)
Map Location 87,375,063 - 87,375,343
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr
Downstream geneLOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292J20.T7 (MSMg01no292_j20.b1)MSMg01-292J20.TJ (MSMg01no292_j20.g1)
ACCAG421289AG421290
length722743
length of high quality
(start - end)
365 (36 - 400)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no292_j20.b1 PHD_FILE: MSMg01no292_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:44 2005CHROMAT_FILE: MSMg01no292_j20.g1 PHD_FILE: MSMg01no292_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTAT
GTACCTCAGTGTTGCATGAACTCAAGAGATTCACCTGCTACCACCCCCCA
AATACTGAAATCAAAGGCATGGACCACCATGCCTATTGATTGATTGATTG
ATTGATTGATTGAGATAGGATCTCACCTAGGGCTAGTCTGGAACTATTTA
GACCAGGCTGGCCTCAAACTCTTAAGTGCTGAAATCACAAACATGTGCTA
CCACACCTAGCCTTGTATTTATTTTTAAGGCTTTCTTTCCTGTCTTTTCT
TTTAAACTTTCTACAGAGAGGCCAGCAAGATGGCTTAGTGGTTAAAGTTT
CTTGCTCCCACCCACCATGGCCTGAGTTCCAACACTATACCCCACATATT
TTCCCCCCCCCAACAACCAAGTGTCCTCTAATCTCCACACACATATCACA
AACAAATAAGTAAAAAAACAAAACCATTTTTTTAGTTGACCGATTTCTCG
AACAACACTGCCTTAATATTTCTGGAGCTGGTAAGATGACTCATTATGGT
TAAACCACCCACCACCAAGCCTGCTGTCCCATACTTGTTCCCTACAACCC
TCCTGCTCTGCATGTCCCGCCGCTCCCTCTTATTCCTTCTCTTTCTCTAT
TCTCCAATATTTTTTTATCTCCCTTCATTTTTCTCTGATTTTCGATTATA
TCTCTCGCTCGCCCTTTCACCT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATTGTCAGTCTTGGCAAGAAGT
ACCTTTGTCCCAAGCCACAGCACCCCTGACATTCGTTCATTCGTTCCTCC
TACTGAAGCAGTCTTGGATAACATCTTTGGGCTGAGATTCTTTGCCATCC
TTGACTACACAATTGCAGACAACCAAATTTACAAGGTTTCCCCCTCTTCG
TCAGTTTTACAGAGGCTTACCCCTTACCTAGTTTCTTCTCATCAGTTTCA
GTGAGGCTGATTTTGTGTTCATTACAAAGGGCCTCTATCATGGTTTGCTG
TAAGCATTTAATAATGTCCCCCCCCCCCTCGCGGATAATATATGCTAGGT
GATCATGAATGACCCCCCACCAAAAAAAAAAANAAAGCAGGAGGGACCAT
CAACCTCTAAGCATGTGGTCTGGATACATGGGATCCAGTAGCACCTTCTG
ACTTCCAAGGATACCAGATCCCCAGAAACGGGAGTTACGGATTATTGTGA
TCCACCATGTGGTTGCTGTCTAGTGTGCCCGGCTCCTCCTTCATATTTTT
CCGTGTATTTTTTCTCTCTTTCTGCGTCCCTCACTTTTTATTCCTCCAGT
CCCTTATGTCCACTTTTTTTCTCTACCTTATTCCGCATCTTCTTATCCCT
TCTTTTCTCCCCCTTCTCCTTCCCCTTCTCTTTCCCCACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_j20.g1 MSMg01no292_j20.g1 CHROMAT_FILE:
MSMg01no292_j20.g1 PHD_FILE: MSMg01no292_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:44 2005
         (281 letters)



>mm_chr8_87374863_87375543
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattgtcagtcttggcaagaagtacctttgtcccaagccacagcacccctgacattcgt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agattgtcagtcttggcaagaagtacctttgtcccaagccacagcagccctgacattcgt 260

                                                                       
Query: 61  tcattcgttcctcctactgaagcagtcttggataacatctttgggctgagattctttgcc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattcgttcctcctactgaagcagtcttggataacatctttgggctgagattctttgcc 320

                                                                       
Query: 121 atccttgactacacaattgcagacaaccaaatttacaaggtttccccctcttcgtcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccttgactacacaattgcagacaaccaaatttacaaggtttccccctcttcgtcagtt 380

                                                                       
Query: 181 ttacagaggcttaccccttacctagtttcttctcatcagtttcagtgaggctgattttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacagaggcttaccccttacctagtttcttctcatcagtttcagtgaggctgattttgt 440

                                                    
Query: 241 gttcattacaaagggcctctatcatggtttgctgtaagcat 281
           |||||  ||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcagcacaaagggcctctatcatggtttgctgtaagcat 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)