BAC Information

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BAC

Clone NameMSMg01-292M21
Chromosome8 (Build37)
Map Location 108,661,170 - 108,857,866
singlet/doubletdoublet
Overlap geneLypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
Upstream geneBC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M21.T7 (MSMg01no292_m21.b1)MSMg01-292M21.TJ (MSMg01no292_m21.g1)
ACCAG421425AG421426
length790776
length of high quality
(start - end)		254 (71 - 324)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no292_m21.b1 PHD_FILE: MSMg01no292_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:58 2005CHROMAT_FILE: MSMg01no292_m21.g1 PHD_FILE: MSMg01no292_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,661,170 - 108,661,420)(108,857,583 - 108,857,866)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGATCCGCGGA
ATTCAACAGGAGTCACTCTAGGGACTATAAAAGGTCGCGACGTCTGGCTT
GAGGTTAATGGAAGTTACACAGGCTCAAAAGCCGACAGTGAGCGCTACCA
GGTATCCACTGGAAGTCGGTGAGAGAGATCCGTTGGGGAAAGGGAGGGAG
GTAAAGATCAAGGGTTCTTAGAACTGTGGGCGGTCACTAGAGATCACAGA
GAAGGACGTGCCCATACAGGTGTCGGGTCGGCGTAGTGCCGGCAGTGCAA
GGCGCACGTTACTGTGGACCTTTTTTTTCTTGCCGTGGTGCCAAGGTAGG
AAAATCGGGCTTATTTTTTTTTTAGCCCCCCCCCCCCCCTGAAGCCGTGT
CTGCTGGTATAGATCCCCCCCCCCTTTTTTAACAAAAAAAATTGGNGTTT
GCCTGGTTGTTTTTGACTGTCCTGCAAGATGTTGTATAGGTTTTAATTTT
TAGCATATTTCTTCTTTAAACATCTTCCAAATCTCCCCCTCCTAGTTTCC
AAAGTTCTATTTATTTACTTTCTTCAAATCTCTTCTTTTCCTCCCTGTAT
TTTACTTAATTTCATTTAATCTTTATCAATTATTTTATATTATTTTATTA
CTTCTTCTTAAACGCCAAATCTTTTTTTGTTTTTTTTGTATTTTCCCCTC
TTTTCCTTTCCTTTTTCCCACTTTATATTATAACTCTCACCCCTCTTGTT
TTCCATTTCACCCCTCTTATTTTCTATTTTGTACTTCCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGACAGCCAGAGCTACACAACAC
AACAAAACAAACAAGAATACCCTTGTACAAGAAATTAAGTATCTGCAGAT
AACAGAAACATGTGAGTGGTGTTTTGTTCTTTGGGGGTTCAAGAAAATTC
TTGAAACTCATAGGAAAGAAGTAAAGAACTCTAAGTTTGAAAATCTTGTG
GGTAGAGTTACGGCTTGCTGAGAAGAGGCTCCTTAAAAATATGCAGGAGG
TCGGGTAGGCTATGTTGAAGGACTGATCTTGAATGACAGTGTCAGTGTGC
TCTCGCGTGGTGGCTTTCATTGNGTTCACCATCCCTGCCCCAACACAGCC
TTTCCTGGAAAACAGTGTGCCCCCCTGCCAAATAAAAAAAAAAAACTAGC
GGCTGATGAGTAGCAGATTGGCTGAGCAGGGAAGGCTTGGATCTATCCAA
GGTTCTGGAATACAGGCCTCTGCCTGCCAGCTGTAAAGAGGAAGGACTAG
AACAGAGCGGAGGTCTGCAGTATCTTAGGGGATTTCCCTAATGTTGATCT
CAGAAGATTATGGGAGAATTTTTATTATGTAACGGTTTCTGCTGACGCGA
CATTTTGTACAATCCCTTCCTTATTTCTCTATTTAACATTTACTGTTTAG
ACATAACCTTTTTTATATTCTTCTTTTCTCTCGGCGTTTACGCCCTTTTT
TCTCGAAAATTCTTTTGCTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m21.b1 MSMg01no292_m21.b1 CHROMAT_FILE:
MSMg01no292_m21.b1 PHD_FILE: MSMg01no292_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:58 2005
         (254 letters)



>mm_chr8_108660970_108661623
          Length = 654

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggactataaaaggtcgcgacgtctggcttgaggttaatggaagttacacaggctcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 201 gggactataaaaggtcgcgacgtctggcttgaggttaatggaagttacaaagggtcaaaa 260

                                                                       
Query: 61  gccgacagtgagcgctaccaggtatccactggaagtcggtgagagagatccgttggggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccgacagtgagcgctaccaggtatccactggaagtcggtgagagagatccgttggggaa 320

                                                                       
Query: 121 agggagggaggtaaagatcaagggttcttagaactgtgggcggtcactagagatcacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggagggaggtaaagatcaagggttcttagaactgtgggcggtcactagagatcacaga 380

                                                                       
Query: 181 gaaggacgtgcccatacaggtgtcgggtcggcgtagtgccggcagtgcaaggcgcacgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggacgtgcccatacaggtgtcgggtcggcgtagtgccggcagtgcaaggcgcacgtt 440

                      
Query: 241 actgtggacct 251
           |||||||||||
Sbjct: 441 actgtggacct 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no292_m21.g1 MSMg01no292_m21.g1 CHROMAT_FILE:
MSMg01no292_m21.g1 PHD_FILE: MSMg01no292_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:58 2005
         (289 letters)



>mm_chr8_108857383_108858071
          Length = 689

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacagccagagctacacaacacaacaaaacaaacaagaatacccttgtacaagaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cagacagccagagctacacaacacaacaaaacaaacaagaatacccttgtacaagaaatt 425

                                                                       
Query: 61  aagtatctgcagataacagaaacatgtgagtggtgttttgttctttgggggttcaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aagtatctgcagataacagaaacatgtgagtggtgttttgttctttgggggttcaagaaa 365

                                                                       
Query: 121 attcttgaaactcataggaaagaagtaaagaactctaagtttgaaaatcttgtgggtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 attcttgaaactcataggaaagaagtaaagaactctaagtttgaaaatcttgtgggtaga 305

                                                                       
Query: 181 gttacggcttgctgagaagaggctccttaaaaatatgcaggaggtcgggtaggctatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttacggcttgctgagaagaggctccttaaaaatatgcaggaggtcgggtaggctatgtt 245

                                                       
Query: 241 gaaggactgatcttgaatgacagtgtcagtgtgctctcgcgtgg 284
           |||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 244 gaaggactgagcatgaatgacagtgtcagtgtgctctcgcgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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