Query= MSMg01no293_d19.b1 MSMg01no293_d19.b1 CHROMAT_FILE:
MSMg01no293_d19.b1 PHD_FILE: MSMg01no293_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:35 2005
(705 letters)
>mm_chr8_111351159_111352261
Length = 1103
Score = 1288 bits (666), Expect = 0.0
Identities = 691/700 (98%), Gaps = 2/700 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaatgccttactttctgaaaccaaaaaaaatgtagacgacttgtatggtagcac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gaattcaaatgccttactttctgaaaccaaaaaaaatgtagacgacttgtatggtagcac 843
Query: 65 cccgggatgtacagccctgactttgcctccttagactgtctgtatgacgcatgtaacatc 124
|||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 842 cccgggatgtacggccctgactttgcctccttagactgtctgcatgacgcacgtaacatc 783
Query: 125 caggaagcacacccaggaatgaagactcttcgccgcagcccacgaagcacttcccagatc 184
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 782 caggaagcacacccaggaatgaagactcttcgccacagcccacgaagcacttcccagatc 723
Query: 185 tctgctatgacctcatcaatctcaagtctctctccttggtagtagatgaagtgggagcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tctgctatgacctcatcaatctcaagtctctctccttggtagtagatgaagtgggagcta 663
Query: 245 atgaaaaagctaaggaaatcagtaccgctaaggaaacgccaatactcattcgccatcaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atgaaaaagctaaggaaatcagtaccgctaaggaaacgccaatactcattcgccatcaac 603
Query: 305 atcagcagtggaccgcattttttttttccatcctgctttgaattgcttcatcctggcact 364
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atcagcagtggaccgca--ttttttttccatcctgctttgaattgcttcatcctggcact 545
Query: 365 tacaccacgtggctcgcgggcagggcccgcatctctgtctccacattccctacaaggcct 424
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tataccacgtggctcgcgggcagggcccgcatctctgtctccacattccctacaaggcct 485
Query: 425 gcctagcaaagctattactcattaagtgtcaaaatagtaattatcacaggtggtgaatgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcctagcaaagctattactcattaagtgtcaaaatagtaattatcacaggtggtgaatgc 425
Query: 485 gcaaacgggttcctggctggctgtactggactagcccgcacttgcctggggcacaggact 544
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 424 gcaaacgggttcgtggctggctgtactggactagcccgcacttgcctggggcacaggagt 365
Query: 545 ttaaacagtcggaatgctgtgctgctgcgcacggcccgtgcttcctgtttacttatttat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttaaacagtcggaatgctgtgctgctgcgcacggcccgtgcttcctgtttacttatttat 305
Query: 605 ttgttaccggcaaggagaggcgtgagtttcctgcttttagaggaaatgggttaactcttt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttgttaccggcaaggagaggcgtgagtttcctgcttttagaggaaatgggttaactcttt 245
Query: 665 gaagccacacaaagccacacgcttgatagttttgcactca 704
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gaagccacacaaagccacacgcttgatagttttgcactca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1103
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1093
Effective search space: 759635
Effective search space used: 759635
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no293_d19.g1 MSMg01no293_d19.g1 CHROMAT_FILE:
MSMg01no293_d19.g1 PHD_FILE: MSMg01no293_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:35 2005
(292 letters)
>mm_chr8_111192751_111193442
Length = 692
Score = 518 bits (268), Expect = e-151
Identities = 287/294 (97%), Gaps = 2/294 (0%)
Strand = Plus / Plus
Query: 1 ctccgaggggtgggggagtggaataccaaggcctcctgggggataatggcagactgtaca 60
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 201 ctccgaggggtgggggagtggaataccaagacctcctaggggataatggcagactgtaca 260
Query: 61 gcccaggataggttgcacatgcaacctgccttgctcccttcctacctccatcctcctcta 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 acccaggataggttgcacatgcaacctgccttgctcccttcctagctccatcctcctcta 320
Query: 121 tgctcacctctcaaaatatcttcagacttcggtgttaagaacccggaaggctagtgtgcg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttcacctctcaaaatatcttcagacttcggtgttaagaacccggaaggctagtgtgcg 380
Query: 181 tcaaccataaaataaaaaaataaaaaataaaaaaataaaaaaa--tctctgacaataaaa 238
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tcaaccataaaataaaaaaataaaaaataaaaaaataaaaaaaaatctctgacaataaaa 440
Query: 239 aaattactattcaaagaaaagtattattttagggtgacattatttttcagagcc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattactattcaaagaaaagtattattttagggtgacattatttttcagagcc 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
