BAC Information

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BAC

Clone NameMSMg01-293J14
Chromosome8 (Build37)
Map Location 80,596,345 - 80,596,662
singlet/doubletsinglet
Overlap geneEG622803
Upstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
Downstream geneTtc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340, EG666346, D630040G17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293J14.T7 (MSMg01no293_j14.b1)MSMg01-293J14.TJ (MSMg01no293_j14.g1)
ACCAG422006AG422007
length762766
length of high quality
(start - end)
322 (46 - 367)687 (77 - 763)
definitionCHROMAT_FILE: MSMg01no293_j14.b1 PHD_FILE: MSMg01no293_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:04 2005CHROMAT_FILE: MSMg01no293_j14.g1 PHD_FILE: MSMg01no293_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCATGCATATCCCGAGAGGCCGATTTTATAGGGGTGGTAAAACT
ATCCTGGCTTATTCTGACCGAGTGAGTACACACACAGCTCTTCCTTTCCT
CTGCATTGCAATGCATCCTGCACTAACCTGATTGTCATTATTTCCTGCTG
TCAATCTCATACGGGAACAGGCGACATCACTCTACTTTGTCATGGTAAAA
AGTTTATCCTGCAACTTTGCAGCTTCTTAGGTCTTCTGTGAAAGGCTGTG
CTTACCCGTGTGTGCTTCTGGGCATCTCCAGGGCTCTGCATTTAGCTCCA
TACTTCTGAAAGCATCTGTACAGACATAATATTAACGTTATTGCAACAGA
CAGGAGGAACCTCATTTCTCTCTGCTTTGACTGAAACTGTCTGTTCGTAG
TAAAATTGTGCAGACATTGGCATTTTTGAGGGAGGTGTGAATGTGGTAGG
ACCAGTCACTGGTGGGAGAAAGAAGTAAGATACAAGACACTGCCAGATGA
CTAGTTTCTTTCTTTTCATTTTTTTTTTTGGTACTCAAAATGGGCTGGTG
AGCCATAATCATCAACATTATTTTTCTTGGCTGCCAAGATGGCTCAGCCA
ATGAAGGTACCTGCTACTAATCCCAATGCCCGCGGACTGATCCTCAAGAC
TGACACGGTAGAAGGAAAACTGAGTGTTTTCAAGTTGTCCTCTGACCTCC
CAGGCAGCATGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCAGCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCGAAACAACCCTGAGATTTCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAA
ATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATC
CCACAATACCTTTCCTGTTTTTATATCCAGAAGACATTCCAACCGGTAAG
AAGGACACATGCTCCACTGCGCTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGAAGGGCATCATCCTGAG
TGAGGTAACACAATCACAAAGGAATCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTG
CTAAACGCATGANACTCAAGAAGAACGAAGACCAAAGTGTAGACACTTTG
CCCCTTCTTAGAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_j14.b1 MSMg01no293_j14.b1 CHROMAT_FILE:
MSMg01no293_j14.b1 PHD_FILE: MSMg01no293_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:04 2005
         (322 letters)



>mm_chr8_80596141_80596862
          Length = 722

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcatgcatatcccgagaggccgattttataggggtggtaaaactatcctggct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcagcatgcatatcccgagaggccgattttataggggtggtaaaactatcctggct 463

                                                                       
Query: 65  tattctgaccgagtgagtacacacacagctcttcctttcctctgcattgcaatgcatcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tattctgaccgagtgagtacacacacagctcttcctttcctctgcattgcaatgcatcct 403

                                                                       
Query: 125 gcactaacctgattgtcattatttcctgctgtcaatctcatacgggaacaggcgacatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcactaacctgattgtcattatttcctgctgtcaatctcatacgggaacaggcgacatca 343

                                                                       
Query: 185 ctctactttgtcatggtaaaaagtttatcctgcaactttgcagcttcttaggtcttctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctctactttgtcatggtaaaaagtttatcctgcaactttgcagcttcttaggtcttctgt 283

                                                                       
Query: 245 gaaaggctgtgcttacccgtgtgtgcttctgggcatctccagggctctgcatttagctcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaaaggctgtgcttacccgtgtgtgcttctgggcatctccagggctctgcatttagctcc 223

                             
Query: 305 atacttctgaaagcatct 322
           ||||||||||||||||||
Sbjct: 222 atacttctgaaagcatct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)