BAC Information

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BAC

Clone NameMSMg01-293M21
Chromosome8 (Build37)
Map Location 78,238,924 - 78,239,216
singlet/doubletsinglet
Overlap gene1700007B14Rik
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293M21.T7 (MSMg01no293_m21.b1)MSMg01-293M21.TJ (MSMg01no293_m21.g1)
ACCAG422151AG422152
length749748
length of high quality
(start - end)
327 (33 - 359)294 (62 - 355)
definitionCHROMAT_FILE: MSMg01no293_m21.b1 PHD_FILE: MSMg01no293_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:20 2005CHROMAT_FILE: MSMg01no293_m21.g1 PHD_FILE: MSMg01no293_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGTACC
CCAGCTCTTTGTTTTGTTTAATTATTTTTTATATTGTTCTCTTTGTTTTT
ACTTGATTGACTTCCCCCCCAAGTTTGATTATTTCCTACCATCTACTCCT
CCTGGGTGTGTTTGGTTCTTTTTGTTCTAGAGCTTTCAGGTATACTTTTA
ATTACGTAGCATGGGAACTCTCCAGTTTCTTTATGAGGGCATTTAGTTCT
ATGAACTTTTCTTTTAGCACTCTTTTTATTGTGTCCCATTAGTTCAGGTA
TGTTGTGCCCTCATTTTCATGGAATTCTATAAAGTTTCTGCTTTAGTTTA
TAAATATATTGAATACAGCTGCTTGAGTTTTGATTATTTATTCATCATTG
GATCTCTGCACAAAGTCTGCTCGGTAATGTCATATAGTCTGAAAACACTT
GCTAGGTTCTATTTGTGATCATGTTAACAGTTTCTATGTCTATTCTTTTG
AGCTCCGTTGCTTTTTTAGTGCTGTTGTTTGTTATTACAGTTGACAGTGT
TTTCCGGTTGGTATAATGAACTTGTATTGTCTTTTCTCTTGTATTCTGGA
ACAGATTGACACACTTGTGCTAACTCTTCTTTAAATATTTGTAAGCATTT
TTCAATGAAACCAACCAGTCTGGTGATTCCTTTTGCTTGACGGTTGTATG
GNTTGGATAACAGAATAAATGGGGAAGATGGCTGGGAGAGGGGATCTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCATAATTAGTTTCTAGTTACTCTATAGCCCCAGATTCTC
CAATAATGTTAATAAATTAATTTATTCCCAGTTTATGAAAAAGCACACAT
CTGGAAACTGACATTTCAGAAAATTTGCTCTGCAATCCAGGGGTCCTTAT
TTCAAATCCCTGGCATGCATGTAAAAAGTTAAATACCAGCATCAAGGCAA
AAAGATAGGTGGATCTGGAGAGCTCACTGGCCAGCCTGTCAAGCTGAAGT
TCTGGCTCAGTGTGAAACCTTGTCTCAAGTAATAAAGTGATTAGCAATAA
ATGATTATTCTCAATGTCCACCTCTGGCTTCAGCATGCATACTCATAGAT
TCATATATTCGCACACAAATTACACAATTAATTGAGCTCTCAGCAACTTA
TACTCCCTGGTATTTCAGTACTAAAGTCATCGGGTATATTTTCCACATGA
AAAATTAACACACTTATTAGTGTTTTTCTTCTTTGATATAAAAGACCAAC
CTTTTTTCTGTCTTCAGTTCTTTCTTTATAGGTTGCAGATCTTTCTTCCT
AATGGGTCTCTGTAAAGAGTTGAGATAAGAAGAAAATAACTTGACTACCT
GTAAACTTTTAATTTCATTTATGTTATAGTTTCAAGTGAAGAATAAATCT
TCAAAATAAAAATATATTTATATTCTGATATATCACAAACTCAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_m21.g1 MSMg01no293_m21.g1 CHROMAT_FILE:
MSMg01no293_m21.g1 PHD_FILE: MSMg01no293_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:20 2005
         (294 letters)



>mm_chr8_78238847_78239540
          Length = 694

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataattagtttctagttactctatagccccagattctccaataatgttaataaattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cataattagtttctagttactctatagccccagattctccaataatgttaataaattaat 311

                                                                       
Query: 61  ttattcccagtttatgaaaaagcacacatctggaaactgacatttcagaaaatttgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttattcccagtttatgaaaaagcacacatctggaaactgacatttcagaaaatttgctct 251

                                                                       
Query: 121 gcaatccaggggtccttatttcaaatccctggcatgcatgtaaaaagttaaataccagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcaatccaggggtccttatttcaaatccctggcatgcatgtaaaaagttaaataccagca 191

                                                                       
Query: 181 tcaaggcaaaaagataggtggatctggagagctcactggccagcctgtcaagctgaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcaaggcaaaaagataggtggatctggagagctcactggccagcctgtcaagctgaagtt 131

                                                                
Query: 241 ctggctcagtgtgaaaccttgtctcaagtaataaagtgattagcaataaatga 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ctggctcagtgtgaaaccttgtctcaagtaataaagtgattagcaataaatga 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)