BAC Information

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BAC

Clone NameMSMg01-294G08
Chromosome8 (Build37)
Map Location 44,035,402 - 44,035,708
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294G08.T7 (MSMg01no294_g08.b1)MSMg01-294G08.TJ (MSMg01no294_g08.g1)
ACCAG422580AG422581
length716714
length of high quality
(start - end)
313 (46 - 358)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no294_g08.b1 PHD_FILE: MSMg01no294_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:04 2005CHROMAT_FILE: MSMg01no294_g08.g1 PHD_FILE: MSMg01no294_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAATAATCTCATTAGGAAGAGGCTGGGAAACATAATATCTCTTT
CATCTCTGCCCACATAATTACCTTAACTGTGCAGGAATCTGCCATGTTTA
TGGTCCTAGCATCATCATTAAGCTAAAAACTGAGCGTTCCATTCTACCCT
GAAAAATTCCAATTAAACCCACTTGGAGACATGCACTGAGTTCCAGCACG
GATTCTTTCCCATAAAGATCAAGGGTAGCAGAATGTCACATCAGAGAGAG
GCCAGCTGTAAGCTCATTATCTAGACTGATGATGAACTGCCGTCCTCCAG
TTCTTATCTACTTGATCCCCCCACCCCCCTGAAAGCTGCATCCTGTGACA
CTCTGTGGGGTATGCAGAAGAAAAAAAATCATTACAGTAGATTCACATTA
TGCTTCCACACCAGCTGAGCTGAAGAACTGAACTTTGAAGTGGTACAAGA
TCTGCAGAAACAGATTACGGGCATTTAGCAATAACTTAATTTATCAATAA
TCTAAGCAATGGACGGGGACAAATTGGATGTTTGGGGTTCAAGCAAAAAT
TGTTAACAGGAATAGATAGTTGCAGAATATTGGTGTCATTTAAACTCTTT
TTTTTTTCTTTCCCTGTTTTATCAGGTATTTAGCTCATTTACATTTCCAT
GCCATTACCAAAAGTC
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGTTTTCATCCTTCTATGGAAGCCC
AGGACTTTGTCTCTTTGATGGCTATGTCTGCAGCATGAGGCCCTCTGAGT
TATGTTGAGTGGCAGTCCTCTCATTCCTCCCACCCCCTCCTGTTTTTCCT
TCTTTCTCCATCCTTCTCCTTCCTCCTCTTTCTCCTTTTTGACCCCTCCC
TATCTCTTGTTCTTTGTTTTTAAGACAAGTTCTCATTCTCCACTTGGCTG
AAACTTGCTCTGTAGACTAGGCTGGCCTCAAACTCTCAGAAAGTTCACTT
CTGTGTTTTTCCTTTTCCCCACCCCCCGCAATAAAGGTGTATGACAACTG
CTTAGCTCTTTGAGCTACAAAAAAGAAAAATTATTGTTATGAAATCGAAC
CACCAAGAATACCCAGGAAGCAAAACTCCCTGTGCATGTATATTTTCTTT
CTAGTAGGATTCTAATGTCTTGGTAATGTATCCCAGACAAATAATACTTT
CCATATTAATTAACCATCATCACAAGCTAGGTACTATACATACTATTTAT
TATTATTAGGAAAGCTGCTCCACTCTGTATGTCTACTAGGCAGAAGAACA
CGGCAACTACCTAGGCTAACTCAGGAGCCTTCTTATAATCACTGGGATGT
ATTCTTATTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_g08.b1 MSMg01no294_g08.b1 CHROMAT_FILE:
MSMg01no294_g08.b1 PHD_FILE: MSMg01no294_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:04 2005
         (313 letters)



>mm_chr8_44035198_44035910
          Length = 713

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaataatctcattaggaagaggctgggaaacataatatctctttcatctctgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaataatctcattaggaagaggctgggaaacataatatctctttcatctctgc 264

                                                                       
Query: 65  ccacataattaccttaactgtgcaggaatctgccatgtttatggtcctagcatcatcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccacataattaccttaactgtgcaggaatctgccatgtttatggtcctagcatcatcatt 324

                                                                       
Query: 125 aagctaaaaactgagcgttccattctaccctgaaaaattccaattaaacccacttggaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagctaaaaactgagcgttccattctaccctgaaaaattccaattaaacccacttggaga 384

                                                                       
Query: 185 catgcactgagttccagcacggattctttcccataaagatcaagggtagcagaatgtcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgcactgagttccagcacggattctttcccataaagatcaagggtagcagaatgtcac 444

                                                                       
Query: 245 atcagagagaggccagctgtaagctcattatctagactgatgatgaactgccgtcctcca 304
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 445 atcagagagaggccagctgtaagctcattagcaagactgatgatgaactgccgtcctcca 504

                  
Query: 305 gttctta 311
           |||||||
Sbjct: 505 gttctta 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)