BAC Information

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BAC

Clone NameMSMg01-294K16
Chromosome8 (Build37)
Map Location 115,323,643 - 115,367,769
singlet/doubletdoublet
Overlap geneCntnap4
Upstream geneCfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294K16.T7 (MSMg01no294_k16.b1)MSMg01-294K16.TJ (MSMg01no294_k16.g1)
ACCAG422780AG422781
length712711
length of high quality
(start - end)
318 (45 - 362)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no294_k16.b1 PHD_FILE: MSMg01no294_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:24 2005CHROMAT_FILE: MSMg01no294_k16.g1 PHD_FILE: MSMg01no294_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,323,643 - 115,323,957)(115,367,484 - 115,367,769)
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAATAACTTGTAAGGAAACAATGTTATTCTTTCTAAGAGAGGCAG
AGAAACTGACAACAGCTACAAGTGCAACCATAAAGCAAAACAACACACAG
AACCACTGTGAGGTTGAAAAACCTCCAAATGTAGATTTGTCTTGCAAGTT
ACAGAGAGTAAATCTCTCTAGAGAGATTTAAAGGTTTGGCTGCCACCCAC
CCTCTGGGGTAATTAAAATCTAAGGATTTGTGACCTCCCTGATACAGATT
TGTTACATTCCAGAGCCACAGTTCTTCTCACTTTAGGGAGGGGGAGGGGG
AGAGTCATCCTGTATAAGACCTGCATCTCACTAGTCAGAGCTCTTGTCTT
GGGATTCTGCTGCAGCGCACACACACAAGTGCATCTGACAGTGCCATGGC
TTGTGAGAAACTGGAATGTGAGAAACCTCAGCTGTTAAGGTTCCCTGTGA
GAAACGGTTCCCAATAAGGAGTACTTCCAGGTCAGTTAGGACAGGTAGGT
AGGTAAGTAGATGACAGTAGTAAAAGACAGGTCAGTACTTGATAGATGAT
AGATGTATAAATAGTAAATGAATGTGTAATTGATGACAGATAGATGATAG
ATACATAAATGATAGATTATGAATGTGTAGATTAGTGATAGGTAAATAGG
ATGATGCCCTTT
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAGATATCTATGTCCATTTCCTGA
CGGAGCTTCTAGTATGGTATTAAGAGAAAAGTTATATATTTCTTCCAAGT
CTACTTTATGGTTTCTCTACTCTTAAATAAGTCAACTGAGTGGCCACAAG
TCTGTGAGTAGAATATCTATCAGGGTGCTTTCGTTGTGGAAGCTATTCAT
TAAATTTGTTTTCAGGGAAAGAATAAATAATGAAAATAATGAGGACATAA
ATTTATTAGAGACCTAAATATGTCTTTGTCAAATATGTCACTAGCAAGCT
CATTTCTTTCTTTTTTTAGATGCTCCCCACATTGTTAGGCAGCTAAAGGT
GTAAGTGGGGGGGGGAATAGCCGAAAAAATTTGTTCTAAGTATAGCCATT
AGAAATGTCTGGGTTATAATTTCTGATAATTTATCATTTATCCTGCCTCA
TCATGTCTCTGAGTCTTTGTTTACATTAAAATGTATGAGCAGGGATCAGA
TAAACGATAATCCTTGAACTTCATGGTCTGTAACATCTGCAAAAGTAATT
AGCAAAGATGCAAAAGAAAATGGAACCCATGGAGAGGGATTCCAGCCTGG
TGCCCAGCAAACACTGAGTCAATGGACATTGTAAAGTAAATTATCAGAAG
AGCACAGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_k16.b1 MSMg01no294_k16.b1 CHROMAT_FILE:
MSMg01no294_k16.b1 PHD_FILE: MSMg01no294_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:24 2005
         (318 letters)



>mm_chr8_115323440_115324157
          Length = 718

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaataacttgtaaggaaacaatgttattctttctaagagaggcagagaaact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaataacttgtaaggaaacaatgttattctttctaagagaggcagagaaact 263

                                                                       
Query: 64  gacaacagctacaagtgcaaccataaagcaaaacaacacacagaaccactgtgaggttga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacaacagctacaagtgcaaccataaagcaaaacaacacacagaaccactgtgaggttga 323

                                                                       
Query: 124 aaaacctccaaatgtagatttgtcttgcaagttacagagagtaaatctctctagagagat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaacctccaaatgtagatttgtcttgcaagttacagagagtaaatctctctagagagat 383

                                                                       
Query: 184 ttaaaggtttggctgccacccaccctctggggtaattaaaatctaaggatttgtgacctc 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaaaggtttggctgccacccaccctctggggtaattaaaatctaaggatttgtgacctc 443

                                                                       
Query: 244 cctgatacagatttgttacattccagagccacagttcttctcactttagggagggggagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctgatacagatttgttacattccagagccacagttcttctcactttagggagggggagg 503

                          
Query: 304 gggagagtcatcctg 318
           |||||||||||||||
Sbjct: 504 gggagagtcatcctg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no294_k16.g1 MSMg01no294_k16.g1 CHROMAT_FILE:
MSMg01no294_k16.g1 PHD_FILE: MSMg01no294_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:24 2005
         (289 letters)



>mm_chr8_115367284_115367972
          Length = 689

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagatatctatgtccatttcctgacggagcttctagtatggtattaagagaaaagtta 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 486 aagagatatctatgtccatttcctgacggagcttctagtatggcattaagagaaaagtta 427

                                                                       
Query: 61  tatatttcttccaagtctactttatggtttctctactcttaaataagtcaactgagtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tatatttcttccaagtctactttatggtttctctactcttaaataagtcaactgagtggc 367

                                                                       
Query: 121 cacaagtctgtgagtagaatatctatcagggtgctttcgttgtggaagctattcattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cacaagtctgtgagtagaatatctatcagggtgctttcgttgtggaagctattcattaaa 307

                                                                       
Query: 181 tttgttttcagggaaagaataaataatgaaaataatgaggacataaatttattagagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttgttttcagggaaagaataaataatgaaaataatgaggacataaatttattagagacc 247

                                                         
Query: 241 taaatatgtctttgtcaaatatgtcactagcaagctcatttctttc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taaatatgtctttgtcaaatatgtcactagcaagctcatttctttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)