BAC Information

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BAC

Clone NameMSMg01-295M17
Chromosome8 (Build37)
Map Location 107,812,479 - 107,812,690
singlet/doubletsinglet
Overlap gene4931428F04Rik
Upstream geneCmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3
Downstream geneExoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M17.T7 (MSMg01no295_m17.b1)MSMg01-295M17.TJ (MSMg01no295_m17.g1)
ACCAG423587AG423588
length772764
length of high quality
(start - end)
221 (44 - 264)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no295_m17.b1 PHD_FILE: MSMg01no295_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:49 2005CHROMAT_FILE: MSMg01no295_m17.g1 PHD_FILE: MSMg01no295_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGTAATTACGTGGAGGTAGGTGGAATGAACGAAGGGAAAATGGAAG
AACTGGCCCATATAGTGGTCACGCTAGACATCCAGAAAAGTATACAGTTT
GAGGGTGAATGAGATCTGAGACTAGAAGTCGTTTTTTAAGCAGCTGATCA
CTAGGTAAGGTGGAGGAAGACTCCGAGGAGGAGGAGGATGCCGGGGTGGG
GGTGGGGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNN
NNNNNNNGNNNNNNNNNTTTTTTTTNTTTTTTTTTTTNNTTTTTTTNNNN
NNNTTTTTTTTTTTTTCCCCCCCCCCCCCCCCNNNNNNNTNNTTNNNNNN
NNTTCTTNCCCCCCCCTTTAAAAAAAAAAAAAAAAATTTTGGGGGGGGTG
GTGTGTTCCTCCACTTTTCTTCCCCCCTTTTCCTTCTTTCACTCCTTTCT
TTCTCTCCGCCCCTTGTTCCTATTTCTCCCTTCTTACGTTTTTTCCATTT
TTACTTTCCCCATTTTAGCTTTTTTCCTCTCTTGTTTTTATTCCTCCCCC
TTTTTTTCTTTTCCCCTTTCTCCCCTCCATTCTTTCTTTCGCTTATCCAT
TCTTTACACCACCCACATTCTTCCTCCCTTTTTTTTTTCACACCCATATT
TTTATTATTCCGTCTTTCCCTTTTCTCATCCTCTCTCTTTTTCTCCCCCC
CCTCTTTTTTCCACTTTTTTTT
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCGTACCCCATAA
AAGCCCCTGGCTTTCGAGCCTCGTGGCCGGCATCTGTTATCTCCTGTGTG
GGATTCATGCCGGTCCGGAGCTCCGTAATTAAACGTCCTCATGTAATTAC
AGCGAGTGGGTCCTCGTGTTTCTTTGGGTGCTCTCACACTCCTGAGACTA
GAGTGGGGGTCCCCGAAAGGGGGTCTTACATTTTGGGGGCTCGTCCGGGA
TTTGGGTGCACCCAGAAACCTGAGAATACCCCTTGGAGGTACGTTTGTTT
TTGTGAGTCTTCTATGTTGCCTCGCCCCTAAGTGTCTAAGTGTGGCACCG
CTGAATTTCTGCCTTTGTTTTTCAAATCTGAGATTGTGGGTTTGAGTCCC
ACCTGCGTTTCCAGTTCTGGTATTCTGTATTCTGGCAGCTGCCACTGTGG
GCCGTAAGGACCCTAGTGGCTGTGGGAGGACGACGGTCTATGGCCCCACA
GGCTGCACCCCTGGAAGACGTTCCAAGGGAGACCCTGGAGAGAGTGCCCA
GGGTATGGACCAGTCAGGAGGACCTGGCTGTTGCCTGTCATAGTACAGGA
GAGAGAGTGTTCTCTCTGCCAGAGCAGGTATGGATGCGGACTCCCACCCT
ATCTGGAAGGCATACGATGTGTAATCTCATCCCGCCCCTAATAGCGATTG
GCTTGTCTGGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m17.b1 MSMg01no295_m17.b1 CHROMAT_FILE:
MSMg01no295_m17.b1 PHD_FILE: MSMg01no295_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:49 2005
         (221 letters)



>mm_chr8_107812275_107812893
          Length = 619

 Score =  375 bits (194), Expect = e-108
 Identities = 209/214 (97%), Gaps = 2/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggtaattacgtggaggtaggtggaatgaacgaagggaaaatggaagaactggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaattctggtaattacgtggaggtaggtggaatgaacgaagggaaaatggaagaactggc 357

                                                                       
Query: 65  ccatatagtggtcacgctagacatccagaaaagtatacagtttgagggtgaatgagatct 124
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccatatagtggtca-g-tagacatccagaaaagtatacagtttgagggtgaatgagatct 299

                                                                       
Query: 125 gagactagaagtcgttttttaagcagctgatcactaggtaaggtggaggaagactccgag 184
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 298 gagactagaagtcattttttaagcagccgatcactaggtaaggtggaggaagactccgag 239

                                             
Query: 185 gaggaggaggatgccggggtgggggtggggggag 218
            |||||||||||||||||||||||||||||||||
Sbjct: 238 aaggaggaggatgccggggtgggggtggggggag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 619
Length adjustment: 9
Effective length of query: 212
Effective length of database: 610
Effective search space:   129320
Effective search space used:   129320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)