BAC Information

Click to search

BAC

Clone NameMSMg01-296F22
Chromosome8 (Build37)
Map Location 8,542,881 - 8,543,164
singlet/doubletsinglet
Overlap geneLOC100039836
Upstream genenone
Downstream geneEfnb2, 9430010O03Rik, Tmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296F22.T7 (MSMg01no296_f22.b1)MSMg01-296F22.TJ (MSMg01no296_f22.g1)
ACCAG424000AG424001
length804732
length of high quality
(start - end)
148 (46 - 193)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no296_f22.b1 PHD_FILE: MSMg01no296_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:32 2005CHROMAT_FILE: MSMg01no296_f22.g1 PHD_FILE: MSMg01no296_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCCAGCCAAGGCTGCAGAGTGAGACTCTGTCTCACACACACG
TGCTGCATGAATTCCCCTTCTCGCCATGTTCTTTTCCCGCGGGTAGGGGT
GGGGGGCAGGAGGAAGGGTGTGGTGTCGGTGAAGGGAGGGNCAAGACAGG
GNTTCTCTGTGTAAGCCCTGGTTTTCCTGGAATTACTTTTGTAGAATATG
TCGTATATGAATTTACATTTCATCCTTGCCTACTGCAACTAAAGGATCGT
GTCACCTCATTCAGATATTTTTTTTAATCTGCGAATGCGCGACTACGCAA
AGAAAAAATTTTTTTTTTTTCCCCCCCCCCCCCCCCAAATTTTTGATGAG
ACTTTTTTCCTTGATCTTCCCCCCACAAAAAAAAAAAAAAAAATTCTGGG
GGGGGGTGCATTTCCTCATTATTCACCTGCGCCCATATCTTATAAATCTT
AAATATTGGTATTTTATATTGTCCCATTTTCTTATTTCTTTTTTTTTCGC
CGTTCTATCTTTCCCATTTCTTTTCACTATTTCCCCATTCATTCGTTTAT
TGTTTTAATATCGCTACATCTATATTCTTCCTTCCTCTGTCATTTACTTT
CGATCACTTTACCGTCGCCTTCATTACACTCTGACCGCTGTCTTCTTCGC
CTTTCTTTTCGCATTCGCTCTCGATCTCACGTTCAGCATACTACCGTCTA
TCGCGCCGCCCGGCCGTCCACCCCCGTCGTCTATCTCGCTCCGCCCTTCT
CATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACCTCTTCCCCAGTAGTTGTGAA
AAACTCACATAAATCATGTGTCCCCTTTCTAATTAGTATTAAAAGCCACA
CTATCTTGATAAAGCCTAAATAAAATCTGAGTAAAGTGTAAAACAATATT
CCTCAAATGGTAATCATTGCATATTTATTATTATATGAGAATAATGTCTA
TGCTATTACTTCTTAATGTTTCCTTTAAAGTGGGTCATTTTTTCAAAACC
CATTTTACTTATTTACTTCAGTCCTAGGAATAATATTATTACATTTAATG
ACCTTCACAATTTGTTGTTCAACCCCCCCCCACCAAACTATCTTGGACGT
TATATGGTAACCACACACATTTTTAAAACAATAAATGAATTCCTTAGGTG
GAAGAAAATAAAAAACCCTAACGGATGAATACAGGTACACAAGCCCCAGC
CCCTAAGCAGTTGTACGTGGTCGTTTTCATTAAAACCAGGATCCCCCTAA
GTAAACCAGTATATCCCGGCGTTACAAAAAGAAATTATTCTGCAAAGTTC
AAGCCTCATTAATGAGACAAATTTCCTATGTCTTGTGGAGTTCTAATGAA
GGGCATGACTCATGTCTTTCGAAAGAGTTCAGCGGGTAAGGCATTTGTGC
AAACCCAAGGCTCTGACCTTGACCACTGTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_f22.g1 MSMg01no296_f22.g1 CHROMAT_FILE:
MSMg01no296_f22.g1 PHD_FILE: MSMg01no296_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:32 2005
         (286 letters)



>mm_chr8_8542681_8543366
          Length = 686

 Score =  495 bits (256), Expect = e-144
 Identities = 277/284 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacctcttccccagtagttgtgaaaaactcacataaatcatgtgtcccctttctaattag 60
           ||||||||||||||||||||||||||||||||||||||||| || |  ||||||||||||
Sbjct: 201 tacctcttccccagtagttgtgaaaaactcacataaatcatttgacaactttctaattag 260

                                                                       
Query: 61  tattaaaagccacactatcttgataaagcctaaataaaatctgagtaaagtgtaaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattaaaagccacactatcttgataaagcctaaataaaatctgagtaaagtgtaaaacaa 320

                                                                       
Query: 121 tattcctcaaatggtaatcattgcatatttattattatatgagaataatgtctatgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcctcaaatggtaatcattgcatatttattattatatgagaataatgtctatgctat 380

                                                                       
Query: 181 tacttcttaatgtttcctttaaagtgggtcattttttcaaaacccattttacttatttac 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 381 tacttcttaatgtttcctttaaagtgggtcatttttttaaaacccattttacttatttat 440

                                                       
Query: 241 ttcagtcctaggaataatattattacatttaatgaccttcacaa 284
           || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagtcctaggaataatattattacatttaatgaccttcacaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)