BAC Information

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BAC

Clone NameMSMg01-296H09
Chromosome8 (Build37)
Map Location 80,304,160 - 80,304,467
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
Downstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296H09.T7 (MSMg01no296_h09.b1)MSMg01-296H09.TJ (MSMg01no296_h09.g1)
ACCAG424066AG424067
length781699
length of high quality
(start - end)
313 (104 - 416)283 (56 - 338)
definitionCHROMAT_FILE: MSMg01no296_h09.b1 PHD_FILE: MSMg01no296_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:39 2005CHROMAT_FILE: MSMg01no296_h09.g1 PHD_FILE: MSMg01no296_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTTTTTTTCTTTTTTTTCTCCTTTTCTTTTCCCTTATATTCNCNNNN
NNNNNTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTCTAGTTACTTACAAAAAGATCTGATCAGTTGTAAG
CTACACTAATCCTAGCCACTTCTGCTGTCTTATTTAACCTCAAGTCTGAT
AGTCCCTTTCCCTGGCTTTTTCCTTACCTCCTTCCCTTACTGTTTCCTCA
TTTATCTTAAATAATTTTTAATTTACAGTACATCCTACGTTAGTGTTACC
ACTTCCTGGTCTGTGACTTTCATGATGAATTAACAGGATTTAGTTAACTT
TGAGTGTGTTTCTCTGTATCTTGTACAGTTTGCCATAATGGTTAAAACAT
TGTTTTCTCCTCTCTTAAGTGNATTGCCCCCCCCCCCCCAAGAATAAACT
ATTCAGAGCTGGAGACATGGTTCCATGATAGAAAAAAACTCCTAGTGCAT
GTAAGGCCCCTGGTTCATTACTAGATACTGAAAACAACCTCCATCACTCG
GAAGATGAAGGCAGGCAGTGAGTACTGAAAACCTAACCAATCATGATGAC
TGTGTCTATGTCCAGATGGCTGGTGAGCATCTCTTCCATATTCATTTGTG
GGGCAGTTTCCATAGAAATCAGTGTTTTGTCCTGTTTCATGTTGCCTGAT
TTTGATCATATACCCTGTAACCATATGTAACTTACTTACAGGACTGTAAC
CAGTTTTATAATCCCCACCCGATACTCCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTGCAATGTTAAGGAAAAAAAATGTATGCTTGCTATCACTTAA
GACCCAGAGGAGCCGGGTGTGGTGGAGCACACCTTTAATCCCAGCACTCG
GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAG
AGTGAGTTCCAGGATAGCCAGGGCTATACAGAGTAACCCTGTCTTGAAAA
AAAAAAAAAAAAAAAAGAATCAGAGGGCTGGGGTCTCTGGATGCAGATTT
TTTTTATAATCAAAAGGAAACCTGGCGGNAAAGGACTGGTTGGTTTTTTC
CAANAACAGAAACCCCCTGTGTTCTGTTGGAGATGAGTTATTNTGTGNAC
CAAATGTTATTNNGAAAGAGCGTCTCGTATAGGGGACACATACTCATGTA
CACACACACACACACTCACCCTCATATATACACCTACTAGCAAGCCGGAC
ATGATCCGAGAGATTTCTTATAATATTGAACAGAACACAGGTCATCAGCT
TGTATCCAGGATTTGACTTCAAGACCGTCTTTTCGGTGTTCCCAGACCCA
TCTTCCCGCACAACCCCTCTCCTTGCTGCGGTTGTTTCTTGTCTCTCTAA
AATGAACCTTCCCTGTGTTGGCCGCATCCTTTCCTCACTCGTTGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_h09.b1 MSMg01no296_h09.b1 CHROMAT_FILE:
MSMg01no296_h09.b1 PHD_FILE: MSMg01no296_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:39 2005
         (313 letters)



>mm_chr8_80303956_80304668
          Length = 713

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctagttacttacaaaaagatctgatcagttgtaagctacactaatcctagcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcttctagttacttacaaaaagatctgatcagttgtaagctacactaatcctagcc 453

                                                                       
Query: 65  acttctgctgtcttatttaacctcaagtctgatagtccctttccctggctttttccttac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acttctgctgtcttatttaacctcaagtctgatagtccctttccctggctttttccttac 393

                                                                       
Query: 125 ctccttcccttactgtttcctcatttatcttaaataatttttaatttacagtacatccta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctccttcccttactgtttcctcatttatcttaaataatttttaatttacagtacatccta 333

                                                                       
Query: 185 cgttagtgttaccacttcctggtctgtgactttcatgatgaattaacaggatttagttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cgttagtgttaccacttcctggtctgtgactttcatgatgaattaacaggatttagttaa 273

                                                                       
Query: 245 ctttgagtgtgtttctctgtatcttgtacagtttgccataatggttaaaacattgttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctttgagtgtgtttctctgtatcttgtacagtttgccataatggttaaaacattgttttc 213

                   
Query: 305 tcctctct 312
           ||||||||
Sbjct: 212 tcctctct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)