Query= MSMg01no296_k03.b1 MSMg01no296_k03.b1 CHROMAT_FILE:
MSMg01no296_k03.b1 PHD_FILE: MSMg01no296_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:52 2005
(233 letters)
>mm_chr8_79912326_79912958
Length = 633
Score = 362 bits (187), Expect = e-104
Identities = 228/261 (87%), Gaps = 30/261 (11%)
Strand = Plus / Minus
Query: 3 gaatcattggggtggctgtacaataatgtgtttttgt----------------------- 39
|||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaatcattggggtggctgtacaataatgtgtttttgtttaaaagtggcctaaatagcaaa 441
Query: 40 -------tattatattttttattgtagttgaaaatgaatgaaacctttattttatatagt 92
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 ttttacatattatattttttattgtagttgaaaatgaatgaaacctttaatttatatagt 381
Query: 93 cagacctttggaagcagaggagagggtttgcattgtcactaggtgacctgtgttttcctg 152
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 cagacctttggaagcagaggagagggtttgcgttgtcactaggtgacctgtgttttcctg 321
Query: 153 gtgtttttcaggcctggcgtccccttgaccgtgcaggcgttttctgaagaagagaggaag 212
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 320 gtgtttttcaggcctggcgtccccttgaccgtgcaggcgttttcagaagaagagaggaag 261
Query: 213 cagtggttggaagctctgggt 233
|||||||||||||||||||||
Sbjct: 260 cagtggttggaagctctgggt 240
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_k03.g1 MSMg01no296_k03.g1 CHROMAT_FILE:
MSMg01no296_k03.g1 PHD_FILE: MSMg01no296_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:52 2005
(536 letters)
>mm_chr8_79912021_79912958
Length = 938
Score = 822 bits (425), Expect = 0.0
Identities = 518/569 (91%), Gaps = 34/569 (5%)
Strand = Plus / Minus
Query: 1 caagatcagcttgagctacatggtaaggcagccctcccacaatattctggacgcgaatca 60
||||| ||||||||||||||||||||| || ||||||| |||||||||||| | ||||||
Sbjct: 859 caagaccagcttgagctacatggtaagacacccctcccgcaatattctggaggtgaatca 800
Query: 61 ttggggtggctgtacaataatgtgtttttgt----------------------------- 91
|||||||||||||||||||||||||||||||
Sbjct: 799 ttggggtggctgtacaataatgtgtttttgtttaaaagtggcctaaatagcaaattttac 740
Query: 92 -tattatattttttattgtagttgaaaatgaatgaaacctttattttatatagtcagacc 150
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 739 atattatattttttattgtagttgaaaatgaatgaaacctttaatttatatagtcagacc 680
Query: 151 tttggaagcagaggagagggtttgcattgtcactaggtgacctgtgttttcctggtgttt 210
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 679 tttggaagcagaggagagggtttgcgttgtcactaggtgacctgtgttttcctggtgttt 620
Query: 211 ttcaggcctggcgtccccttgaccgtgcaggcgttttcttaagaagagaggaagcagtgg 270
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 619 ttcaggcctggcgtccccttgaccgtgcaggcgttttcagaagaagagaggaagcagtgg 560
Query: 271 ttggaagctctgggtggaaaagaagctgtaagaacaccgtggctgcagctctagttcaga 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttggaagctctgggtggaaaagaagctgtaagaacaccgtggctgcagctctagttcaga 500
Query: 331 tgcgctcagctggctcgcttcatctccact-tcatttttcttttatgatgtttgagaaca 389
| | ||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 499 tacactcagctggcttgcttcatcccca-tgtcatttttcttttatgatgtttgagaaca 441
Query: 390 gttccttgctggagctggtgtttgaactcatcttggaactatattggcactcctgtagtt 449
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 440 gttccttgctggagctggtgtttgaacgcatcttggaactgtattggcactcctgtagtt 381
Query: 450 tatcttggtcagctgcagcacacgcatactggggccattattcatttccagttctga--t 507
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 380 tatcttggtcagctgcagcacacgcacactggggccattattcatttccagttctgattt 321
Query: 508 tttttttcttgactttgtcactctgattg 536
|||||||||||||||||||||||||||||
Sbjct: 320 tttttttcttgactttgtcactctgattg 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 938
Length adjustment: 10
Effective length of query: 526
Effective length of database: 928
Effective search space: 488128
Effective search space used: 488128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
