Query= MSMg01no297_c08.b1 MSMg01no297_c08.b1 CHROMAT_FILE:
MSMg01no297_c08.b1 PHD_FILE: MSMg01no297_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:31 2005
(691 letters)
>mm_chr8_70232755_70233845
Length = 1091
Score = 868 bits (449), Expect = 0.0
Identities = 470/481 (97%), Gaps = 9/481 (1%)
Strand = Plus / Minus
Query: 5 gaattcaccatc----tttacatagtttgagtgccacatgaaattagtgtgtcataaatt 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaattcaccatcccaat----atagtttgagtgccacatgaaattagtgtgtcataaatt 421
Query: 61 taaccaattctgttgggtggtaggtcctaataagtgaattcagctcaatgttgctcactc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taaccaattctgttgggtgataggtcctaataagtgaattcagctcaatgttgctcactc 361
Query: 121 actcctggctgcccttgccttctgccctgcactctagtatagtactacatgaagactcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 actcctggctgcccttgccttctgccctgcactctagtatagtactacatgaagactcat 301
Query: 181 aattccttgttcatcataaacttccctcctcagccactctctataaccacatagattgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aattccttgttcatcataaacttccctcctcagccactctctataaccacatagattgat 241
Query: 241 agacagcaagtacagagaagtaaaactttttttttttaacaaatggctggaatgtgggtg 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 240 agacagcaagtacagagaagtaaaac-ttttttttttaacaaatggctggaatgtgggtg 182
Query: 301 tgactttggaattgggcaatgggtagccaatgacagttctgagataaatgcagggaaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgactttggaattgggcaatgggtagccaatgacagttctgagataaatgcagggaaggc 122
Query: 361 ccaattgtcaggagtgaagcataaaaataattctgttaagggctctgagaaaggaagcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaattgtcaggagtgaagcataaaaataattctgttaagggctctgagaaaggaagcta 62
Query: 421 actaaggtgtgcctcgtgtttcccagagagtacttcagtagtacttggcataacatagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 actaaggtgtgcctcgtgtttcccagagagtacttcagtagtacttggcataacagagac 2
Query: 481 a 481
|
Sbjct: 1 a 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_c08.g1 MSMg01no297_c08.g1 CHROMAT_FILE:
MSMg01no297_c08.g1 PHD_FILE: MSMg01no297_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:31 2005
(666 letters)
>mm_chr8_70071990_70073055
Length = 1066
Score = 1249 bits (646), Expect = 0.0
Identities = 661/666 (99%)
Strand = Plus / Plus
Query: 1 acttggagacaaagcttgtgcccaaatgtggcaatgtcttttttactatttagagtaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttggagacaaagcttgtgcccaaatgtggcaatgtcttttttactatttagagtaata 260
Query: 61 aggggaaatgatctttaatgtttctatatgcacttattctttcatgaaaaacaatcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggggaaatgatctttaatgtttctatatgcacttattctttcatgaaaaacaatcaaat 320
Query: 121 tatgcaaaattaggtgacagactgagaagccttgagatatcatcacaaagttcatcaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgcaaaattaggtgacagactgagaagccttgagatatcatcacaaagttcatcaatg 380
Query: 181 attgactggtatatcaacatctgtcccctacattatggtaagaaaatcatagacatcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgactggtatatcaacatctgtcccctacattatggtaagaaaatcatagacatcaaa 440
Query: 241 tatctctttctgcaaaattaaccatttatgtaactaaatgacttttgaagaaatgtgcca 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagctctttctgcaaaattaaccatttatgtaactaaatgacttttgaagaaatgtgcca 500
Query: 301 ttaaaaatgtaatcgcaataaaagtgctttaatgatgatatagttgtcttgatttatact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaaaatgtaatcgcaataaaagtgctttaatgatgatatagttgtcttgatttatact 560
Query: 361 ataaaaccctccatgttgactcattgctagattcactcaaagggtttaatggtggttggg 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 ataaaaccctccatgttgactcattgctggattcactcaaagggtttaatggtggttggg 620
Query: 421 taaagtgtacagtgcagactttatgttcacctagccaagattcacattcatttttacaaa 480
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagtgtacagtgctgattttatgttcacctagccaagattcacattcatttttacaaa 680
Query: 481 atgcccttctatgacataaggcagaaatagggaagaataagatacaatgttggttataag 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 atgcccttctatgacataaggcagaaatagggaagaataagatataatgttggttataag 740
Query: 541 taattctgaaaataagaatgataccagtggaaagtactgagagatggaaagccatgaact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taattctgaaaataagaatgataccagtggaaagtactgagagatggaaagccatgaact 800
Query: 601 tagcacagctggtcaattcttccagaatggctttggcattttcatttctgtattcatgat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagcacagctggtcaattcttccagaatggctttggcattttcatttctgtattcatgat 860
Query: 661 gttcct 666
||||||
Sbjct: 861 gttcct 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
