BAC Information

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BAC

Clone NameMSMg01-297K06
Chromosome8 (Build37)
Map Location 124,727,164 - 124,883,328
singlet/doubletdoublet
Overlap geneGm22, Zfpm1, Trhr2
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp
Downstream gene5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297K06.T7 (MSMg01no297_k06.b1)MSMg01-297K06.TJ (MSMg01no297_k06.g1)
ACCAG424912AG424913
length731737
length of high quality
(start - end)		680 (46 - 725)661 (77 - 737)
definitionCHROMAT_FILE: MSMg01no297_k06.b1 PHD_FILE: MSMg01no297_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:07 2005CHROMAT_FILE: MSMg01no297_k06.g1 PHD_FILE: MSMg01no297_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,727,164 - 124,727,840)(124,882,664 - 124,883,328)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGAGATACCCCAGAGCCTTGTGCATGCTAGGTTAGCCCTTACCA
TCCAGACATCATGTCCCAGGCCTAAATGTGTTTCATGCCCGTGAGTGTGG
CAGTTTCCTAGAGAGGCCACGTGACCTTATGGAAGTGTCATGCCCCTGCC
AGGGTCTAGCCTTGCCATTGGTAGACGGAAGCTGACGACTGTGCTCACCG
CTCACTCTAGGAACTGGGGCTGTAGTGACAAGCCATGTGGACTGCAGCTT
GCCCCTGATGGAACATCACTGTGGGACTGTCAGAGACTTGGATGACATCT
GCCTGCTGTGACACAGGGTACCTGTTAGTTGCCAGTTACTCGCCCATAAG
ACTGGGCATGGTGAATTTTCCAAGGTCTTCCCCGCATCCAGCTCCTCCTG
GCTTTGGGACCATTGTAAAGGGCTCTGACCTCCAAGAGCTAGAGTTCCTT
GGGTCCTCACATGGCAAAAGTCCCTATAATGTCTCCACTGCTCCCAAGAA
AGTCCCTGGCACTGCTGGCACATGCTTCTGTTTACAGAGCCCAGTGAATT
CCGATGGCTTTGCTGGGATGTAGGGTTGGGATCCAAGAAGCTCTTTATGG
GATTCATCCACAACCAGGACTCCCCCGACCCCCAAAGCTATCAGGAGCTT
CGAGGACCATCTGTGTGCTTGGGATAACTCN

NCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGTCAAATCTAGCTGTCCCATT
GGCAGGAGCCGAGGCATTGAATTCAGTAGCTAGTTAGGGCTGCCCAGAAT
CTAAATAGAGCCCAGACCTGCCACATCCAAACAATGAATCATCTGCTTCC
CGAAACCCTGGATGTGCGTAGGGATGTCTCATCTGTACCATGTGATTATC
CCCGGGGGTCTAAGGGTGAGCAATGAAGGCATCCGCCTGCAAGTGATGCA
CAGTCTGACCCCTGCCTTTGGTGCGAGTAGCACAAAACGCTTTGACCACA
CACGTTTTCTTTAGACTACAAAGGTGCCTTTGGTAGGCATGGGGATCACA
GGACGGGACATTTTCAGACCGTTCTGTTCTTCTCCAGAGGCTGGCTTTGC
TCTGCCTGTCCTTGAAGTGCCCTTGCCCTAAACCTCTACAGCCCTTTTCT
TCTGCCCTTCCAAAGTACAGCTCAGCCATTATCGCCTAGACTCAGTTTGG
GACAGGTGTCCCAGACATACAACAAGCAGTCCTTAGGAGCCAACATGCCT
TGCTTGTATCTTACAGGTACATCGCCATTTGCCACCCAATGAGAGCACAG
ACCGTGTGCACTGTGGCCCGGGCCAGACGGATCATCGCAGGCATTTGGGG
GGTCACGTCCCTCTATTGCTTACTCTGGTTCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_k06.b1 MSMg01no297_k06.b1 CHROMAT_FILE:
MSMg01no297_k06.b1 PHD_FILE: MSMg01no297_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:07 2005
         (680 letters)



>mm_chr8_124726960_124728040
          Length = 1081

 Score = 1286 bits (665), Expect = 0.0
 Identities = 674/679 (99%), Gaps = 5/679 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggagata---ccccagagccttgtgcatgctaggttagcccttaccatccaga 61
           ||||||||||||||   ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggagataaaacc--agagccttgtgcatgctaggttagcccttaccatccaga 262

                                                                       
Query: 62  catcatgtcccaggcctaaatgtgtttcatgcccgtgagtgtggcagtttcctagagagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catcatgtcccaggcctaaatgtgtttcatgcccgtgagtgtggcagtttcctagagagg 322

                                                                       
Query: 122 ccacgtgaccttatggaagtgtcatgcccctgccagggtctagccttgccattggtagac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccacgtgaccttatggaagtgtcatgcccctgccagggtctagccttgccattggtagac 382

                                                                       
Query: 182 ggaagctgacgactgtgctcaccgctcactctaggaactggggctgtagtgacaagccat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggaagctgacgactgtgctcaccgctcactctaggaactggggctgtagtgacaagccat 442

                                                                       
Query: 242 gtggactgcagcttgcccctgatggaacatcactgtgggactgtcagagacttggatgac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtggactgcagcttgcccctgatggaacatcactgtgggactgtcagagacttggatgac 502

                                                                       
Query: 302 atctgcctgctgtgacacagggtacctgttagttgccagttactcgcccataagactggg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atctgcctgctgtgacacagggtacctgttagttgccagttactcgcccataagactggg 562

                                                                       
Query: 362 catggtgaattttccaaggtcttccccgcatccagctcctcctggctttgggaccattgt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 catggtgaattttccaaggtcttccccgcatccagctcctcctggctttgggaccattgt 622

                                                                       
Query: 422 aaagggctctgacctccaagagctagagttccttgggtcctcacatggcaaaagtcccta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaagggctctgacctccaagagctagagttccttgggtcctcacatggcaaaagtcccta 682

                                                                       
Query: 482 taatgtctccactgctcccaagaaagtccctggcactgctggcacatgcttctgtttaca 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taatgtctccactgctcccaagaaagtccctggcactgctggcacatgcttctgtttaca 742

                                                                       
Query: 542 gagcccagtgaattccgatggctttgctgggatgtagggttgggatccaagaagctcttt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gagcccagtgaattccgatggctttgctgggatgtagggttgggatccaagaagctcttt 802

                                                                       
Query: 602 atgggattcatccacaaccaggactcccccgacccccaaagctatcaggagcttcgagga 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atgggattcatccacaaccaggactcccccgacccccaaagctatcaggagcttcgagga 862

                              
Query: 662 ccatctgtgtgcttgggat 680
           |||||||||||||||||||
Sbjct: 863 ccatctgtgtgcttgggat 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space:   717570
Effective search space used:   717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no297_k06.g1 MSMg01no297_k06.g1 CHROMAT_FILE:
MSMg01no297_k06.g1 PHD_FILE: MSMg01no297_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:07 2005
         (661 letters)



>mm_chr8_124882464_124883528
          Length = 1065

 Score = 1266 bits (655), Expect = 0.0
 Identities = 661/665 (99%), Gaps = 4/665 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtcaaatctagctgtcccattggcaggagccgaggcattgaattcagtagctagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tgggtcaaatctagctgtcccattggcaggagccgaggcattgaattcagtagctagtta 806

                                                                       
Query: 61  gggctgcccagaatctaaatagagcccagacctgccacatccaaacaatgaatcatctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gggctgcccagaatctaaatagagcccagacctgccacatccaaacaatgaatcatctgc 746

                                                                       
Query: 121 ttcccgaaaccctggatgtgcgtagggatgtctcatctgtaccatgtgattatccccggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcccgaaaccctggatgtgcgtagggatgtctcatctgtaccatgtgattatccccggg 686

                                                                       
Query: 181 ggtctaagggtgagcaatgaaggcatccgcctgcaagtgatgcacagtctgacc----cc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 685 ggtctaagggtgagcaatgaaggcatccgcctgcaagtgatgcacagtctgacccctgcc 626

                                                                       
Query: 237 tgcctttggtgcgagtagcacaaaacgctttgaccacacacgttttctttagactacaaa 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcctttggtgcgagtagcacaaaacgctttgaccacacacgttttctttagactacaaa 566

                                                                       
Query: 297 ggtgcctttggtaggcatggggatcacaggacgggacattttcagaccgttctgttcttc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtgcctttggtaggcatggggatcacaggacgggacattttcagaccgttctgttcttc 506

                                                                       
Query: 357 tccagaggctggctttgctctgcctgtccttgaagtgcccttgccctaaacctctacagc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccagaggctggctttgctctgcctgtccttgaagtgcccttgccctaaacctctacagc 446

                                                                       
Query: 417 ccttttcttctgcccttccaaagtacagctcagccattatcgcctagactcagtttggga 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccttttcttctgcccttccaaagtacagctcagccattatcgcctagactcagtttggga 386

                                                                       
Query: 477 caggtgtcccagacatacaacaagcagtccttaggagccaacatgccttgcttgtatctt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggtgtcccagacatacaacaagcagtccttaggagccaacatgccttgcttgtatctt 326

                                                                       
Query: 537 acaggtacatcgccatttgccacccaatgagagcacagaccgtgtgcactgtggcccggg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaggtacatcgccatttgccacccaatgagagcacagaccgtgtgcactgtggcccggg 266

                                                                       
Query: 597 ccagacggatcatcgcaggcatttggggggtcacgtccctctattgcttactctggttct 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagacggatcatcgcaggcatttggggggtcacgtccctctattgcttactctggttct 206

                
Query: 657 ttctg 661
           |||||
Sbjct: 205 ttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1065
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1055
Effective search space:   686805
Effective search space used:   686805
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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