Query= MSMg01no297_n17.b1 MSMg01no297_n17.b1 CHROMAT_FILE:
MSMg01no297_n17.b1 PHD_FILE: MSMg01no297_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:23 2005
(667 letters)
>mm_chr8_55913222_55914288
Length = 1067
Score = 998 bits (516), Expect = 0.0
Identities = 554/576 (96%), Gaps = 17/576 (2%)
Strand = Plus / Minus
Query: 5 gaattcattaagctccattacactgactgtgcctagcacccctgtctcttcttatcaagg 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaattcattaagcactattacactgactgtgcctagcacccctgtctcttcttatcaagg 501
Query: 65 cctgacctcagaaatacattccttggaaccaataaagaaataagggcatatctgctagct 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 cctgacctcagaaatacattccttggaaccaataaagaaataagggcgtatctgctagct 441
Query: 125 cctggaatccaccagcaatttgattttaaaggcaggagcaaggttaaggtaagctggcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctggaatccaccagcaatttgattttaaaggcaggagcaaggttaaggtaagctggcag 381
Query: 185 cgctcaacagcactctttcattctccacattgagcacatccctggaaaaggtggcattgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cgctcaacagcactctttcattctccacattgagcacatccctggaaaaggtggcattgt 321
Query: 245 cctcagtgagctttcaaagtatatggtttcctacattaggatagttggatgatgagggga 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 320 cctcagtgagctttcaaagtatatggtttcctacattaagatagttggatgatgagggga 261
Query: 305 ggggccacatgagggggcaggaactgggaggagagggagactgtgattgacatgtaaagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggggccacatgagggggcaggaactgggaggagagggagactgtgattgacatgtaaagt 201
Query: 365 gaataaacaaataaataaataaataaataaataaataaataaataaataaataaatacat 424
| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 200 g------------aataaataaataaataaataaataaataaataaataaataa----at 157
Query: 425 gggagaaaaggatcattgggtgaaataaaaacttacaaatctgtacatgaaataaaattg 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gggagaaaaggatcattgggtgaaataaaaacttacaaatctgtacatgaaataaaattc 97
Query: 485 ttactattaaaataatatgtaaacaccaaaacgacaaattgtttagttaag-aaaaaaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 96 ttactattaaaataatatgtaaacaccaaaacgacaaattgtttagttaagaaaaaaaaa 37
Query: 544 ggtaaaattttactgtgaaaaagcttatcattaaga 579
||||||||||||||||||||||||||||||||||||
Sbjct: 36 ggtaaaattttactgtgaaaaagcttatcattaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_n17.g1 MSMg01no297_n17.g1 CHROMAT_FILE:
MSMg01no297_n17.g1 PHD_FILE: MSMg01no297_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:23 2005
(641 letters)
>mm_chr8_55745482_55746522
Length = 1041
Score = 1170 bits (605), Expect = 0.0
Identities = 632/641 (98%)
Strand = Plus / Plus
Query: 1 tctttttatgaaggtaatcatcgaatcttattcttagtattactttcctgctgtttgaac 60
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 201 tctttttatgaaggtaatcatcgaatcttagtcttagtattactttcttgctgtttgaac 260
Query: 61 tatttatattttattaaaatatataaactttgcttttttatttttagctcccagggttga 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tatttatattttattaaaatatataaactttgcttttttattttttgctcccagggttga 320
Query: 121 gtttattgttgatgaagtatattctctcagacataaggtaaccaaaagtcacaagagttc 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gtttattgttgatgaagtatattctcttagacataaggtaaccaaaagtcacaagagttc 380
Query: 181 ataggctataatcacccgaggtcacagggtaaagataaagcttttcatggggtccaaatt 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagactataatcacccgaggtcacagggtaaagataaagcttttcatggggtccaaatt 440
Query: 241 caacttgcagactcatggaattcaatctaatagaatccatggccactttaacctcttctt 300
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 441 caacttgcagactcatggaattcaatctaatagaatccatggccaccttaatctcttctt 500
Query: 301 aaataatccatattttccagtattggtctcactattttatcttttctgtgtttatttcag 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaataattcatattttccagtattggtctcactattttatcttttctgtgtttatttcag 560
Query: 361 cctaccagcaattttcctttagtagataaaacccagaaattttggtttgagtataccgcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctaccagcaattttcctttagtagataaaacccagaaattttggtttgagtataccgcg 620
Query: 421 cttgtgcactgtatagaacttacggttctaaatttgatcaggtgtttcaaatgcaccatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 cttgtgcactgtatagaacttacggttctaaatttgatcaggtgtttcaaatgcatcatt 680
Query: 481 cctttgcagtagttctgagggagcaagctgtcatcttgtcctttaatcacggacaccaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctttgcagtagttctgagggagcaagctgtcatcttgtcctttaatcacggacaccaag 740
Query: 541 ttccacaagttgtcactgccacctggaggctggaagtaggtactgagtaatcaaaaacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttccacaagttgtcactgccacctggaggctggaagtaggtactgagtaatcaaaaacaa 800
Query: 601 tggcacagaaaagaaattctcctagtactttatgccttcag 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggcacagaaaagaaattctcctagtactttatgccttcag 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
