BAC Information

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BAC

Clone NameMSMg01-297P20
Chromosome8 (Build37)
Map Location 33,011,142 - 33,176,245
singlet/doubletdoublet
Overlap geneNrg1
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340
Downstream gene2010007E15Rik, EG666589, EG546052, LOC100042715, LOC628408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297P20.T7 (MSMg01no297_p20.b1)MSMg01-297P20.TJ (MSMg01no297_p20.g1)
ACCAG425162AG425163
length750751
length of high quality
(start - end)		674 (72 - 745)676 (76 - 751)
definitionCHROMAT_FILE: MSMg01no297_p20.b1 PHD_FILE: MSMg01no297_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:34 2005CHROMAT_FILE: MSMg01no297_p20.g1 PHD_FILE: MSMg01no297_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,011,142 - 33,011,815)(33,175,571 - 33,176,245)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAAAGGCGCGGA
ATTCCCTGTAGATACCGATTTCATTTGCTTGGCCGTTAGCAAATGTACAG
CTTCCAAACCTCTGTCCATCAAAACCCAAAACAGGTCAAGCATACACTAG
AACACCAACCACTGTTTGAGCAGAGACATGGCCTCAAAATACGTTTTTAC
TTAAAAAGAAAATTCTTAAAAAGGCAAAGAAATTTGGTTTAGCCATAACA
AATCAAACATAAAAATTTCAGGTGCTTCAGCACTTTATGTCATTAAAAAG
TACTCCTAATGCTGCTAAGTTGTAAACCACAAATTATAAGAATGAATGCA
AATGTAATGCACACCACTCTTAAAGATGATAATAAGAAACAAAAGAATAG
TGCAACATCGCAGTAAATGTTCCTTTCGCAGTGCATTTTTCCCTTAACCC
TTTTTAAAAATGAATATAAGAACAAAACCAACAGAGACTGTTTTCAAATG
GTACGCTTAGGGTTCAAGCTGCCTCAAAAAAAAAATCATGTGTGTTTTAG
CACAGGTCTTAAGGCAAAACTCTGGACTTAGAAAGCCCTCATCCAACAGA
AGATCAACTCTAATCATGTCGTCAAAATTAAATAATGAAATACATTTTAA
CCAAATGTCAGATGAGCTGTAATATTGGAAAGAAAATCCCTCAGAAATCA
CTCTATTAACTTAAATGTCAGCATGCAGCGGTGAAAAGCCGCTTAGGTCC


CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGTGAAAGAACCGCTGATTCCCT
GTGTTCATAGGCAAGAAGTCCTTTAACTGAAGCAGCAAATTCCAGCGACG
ATGAGATACTGTGCTAGCAGATACCAGGAGTCTGAAAAGTAAGACAGAAA
GGTTAGTTTTCATTCTGTAATTATAGTCTTCAATATTCCTTTTCCAAGAC
AAGAAGTAGTGCTATTTGAAGACTAAAGGAAAACCACAAGGGGTTATGAG
CAGACTGAAGCATCTGCAATCAAATAAAATGTGCTAATTAATTTATGATA
TTTATGGTATACATGGTCAACCAGTGTTATATCTATATACTTAGCTTCCA
AGAAAAAAAATCTTAATTTGTTTAAATGGTTTTACCTTGGCCAACTGAAA
TTATGAAAGTGATGTCACCATCAGAGAGCAAGCCCTGGTCTCTTCTGTAT
CACCAACCCTACAGCGGGTACCCGAAGGTTATAGCCCATGAGTGTTTGGG
ATAGGTTGTATATATACATATATCTAGATAAATACATAATGAATCCAAAT
GAGGATTTTAATTGACAGTATGTTTAATAGAGCCAAACCAATTATGGCGT
GGGTGACTTGTTCCCCTTCCTCAATAAGTAGGACCACTGTCATGGATTCC
CATCTATCTGTCCTTTGCTTATTACTGAAGTATGCCCCACATATAATGAG
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_p20.b1 MSMg01no297_p20.b1 CHROMAT_FILE:
MSMg01no297_p20.b1 PHD_FILE: MSMg01no297_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:34 2005
         (674 letters)



>mm_chr8_33010942_33012015
          Length = 1074

 Score = 1303 bits (674), Expect = 0.0
 Identities = 674/674 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgcttggccgttagcaaatgtacagcttccaaacctctgtccatcaaaacccaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttgcttggccgttagcaaatgtacagcttccaaacctctgtccatcaaaacccaaaa 260

                                                                       
Query: 61  caggtcaagcatacactagaacaccaaccactgtttgagcagagacatggcctcaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtcaagcatacactagaacaccaaccactgtttgagcagagacatggcctcaaaata 320

                                                                       
Query: 121 cgtttttacttaaaaagaaaattcttaaaaaggcaaagaaatttggtttagccataacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtttttacttaaaaagaaaattcttaaaaaggcaaagaaatttggtttagccataacaa 380

                                                                       
Query: 181 atcaaacataaaaatttcaggtgcttcagcactttatgtcattaaaaagtactcctaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaaacataaaaatttcaggtgcttcagcactttatgtcattaaaaagtactcctaatg 440

                                                                       
Query: 241 ctgctaagttgtaaaccacaaattataagaatgaatgcaaatgtaatgcacaccactctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgctaagttgtaaaccacaaattataagaatgaatgcaaatgtaatgcacaccactctt 500

                                                                       
Query: 301 aaagatgataataagaaacaaaagaatagtgcaacatcgcagtaaatgttcctttcgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagatgataataagaaacaaaagaatagtgcaacatcgcagtaaatgttcctttcgcag 560

                                                                       
Query: 361 tgcatttttcccttaaccctttttaaaaatgaatataagaacaaaaccaacagagactgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcatttttcccttaaccctttttaaaaatgaatataagaacaaaaccaacagagactgt 620

                                                                       
Query: 421 tttcaaatggtacgcttagggttcaagctgcctcaaaaaaaaaatcatgtgtgttttagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcaaatggtacgcttagggttcaagctgcctcaaaaaaaaaatcatgtgtgttttagc 680

                                                                       
Query: 481 acaggtcttaaggcaaaactctggacttagaaagccctcatccaacagaagatcaactct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaggtcttaaggcaaaactctggacttagaaagccctcatccaacagaagatcaactct 740

                                                                       
Query: 541 aatcatgtcgtcaaaattaaataatgaaatacattttaaccaaatgtcagatgagctgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatcatgtcgtcaaaattaaataatgaaatacattttaaccaaatgtcagatgagctgta 800

                                                                       
Query: 601 atattggaaagaaaatccctcagaaatcactctattaacttaaatgtcagcatgcagcgg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atattggaaagaaaatccctcagaaatcactctattaacttaaatgtcagcatgcagcgg 860

                         
Query: 661 tgaaaagccgctta 674
           ||||||||||||||
Sbjct: 861 tgaaaagccgctta 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no297_p20.g1 MSMg01no297_p20.g1 CHROMAT_FILE:
MSMg01no297_p20.g1 PHD_FILE: MSMg01no297_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:34 2005
         (676 letters)



>mm_chr8_33175371_33176446
          Length = 1076

 Score = 1297 bits (671), Expect = 0.0
 Identities = 674/675 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtgaaagaaccgctgattccctgtgttcataggcaagaagtcctttaactgaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aaggtgaaagaaccgctgattccctgtgttcataggcaagaagtcctttaactgaagcag 816

                                                                       
Query: 61  caaattccagcgacgatgagatactgtgctagcagataccaggagtctgaaaagtaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 caaattccagcgacgatgagatactgtgctagcagataccaggagtctgaaaagtaagac 756

                                                                       
Query: 121 agaaaggttagttttcattctgtaattatagtcttcaatattccttttccaagacaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 agaaaggttagttttcattctgtaattatagtcttcaatattccttttccaagacaagaa 696

                                                                       
Query: 181 gtagtgctatttgaagactaaaggaaaaccacaaggggttatgagcagactgaagcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtagtgctatttgaagactaaaggaaaaccacaaggggttatgagcagactgaagcatct 636

                                                                       
Query: 241 gcaatcaaataaaatgtgctaattaatttatgatatttatggtatacatggtcaaccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gcaatcaaataaaatgtgctaattaatttatgatatttatggtatacatggtcaaccagt 576

                                                                       
Query: 301 gttatatctatatacttagcttccaagaaaaaaaatcttaatttgtttaaatggttttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gttatatctatatacttagcttccaagaaaaaaaatcttaatttgtttaaatggttttac 516

                                                                       
Query: 361 cttggccaactgaaattatgaaagtgatgtcaccatcagagagcaagccctggtctcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cttggccaactgaaattatgaaagtgatgtcaccatcagagagcaagccctggtctcttc 456

                                                                       
Query: 421 tgtatcaccaaccctacagcgggtacccgaaggttatagcccatgagtgtttgggatagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgtatcaccaaccctacagcgggtacccgaaggttatagcccatgagtgtttgggatagg 396

                                                                       
Query: 481 ttgtatatatacatatatctagataaatacataatgaatccaaatgaggattttaattga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttgtatatatacatatatctagataaatacataatgaatccaaatgaggattttaattga 336

                                                                       
Query: 541 cagtatgtttaatagagccaaaccaattatggcgtgggtgacttgttccccttcctcaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cagtatgtttaatagagccaaaccaattatggcgtgggtgacttgttccccttcctcaat 276

                                                                       
Query: 601 aagtaggaccactgtcatggattcccatctatctgtcctttgcttattactgaagtatgc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aagtaggaccactgtcatggattcccatctatctgtcctttgcttattactgaagtatgc 216

                          
Query: 661 cccacatataatgag 675
           |||| ||||||||||
Sbjct: 215 cccaaatataatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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