BAC Information

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BAC

Clone NameMSMg01-298D05
Chromosome8 (Build37)
Map Location 104,586,906 - 104,587,408
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298D05.T7 (MSMg01no298_d05.b1)MSMg01-298D05.TJ (MSMg01no298_d05.g1)
ACCAG425319AG425320
length731739
length of high quality
(start - end)
212 (62 - 273)554 (76 - 629)
definitionCHROMAT_FILE: MSMg01no298_d05.b1 PHD_FILE: MSMg01no298_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:50 2005CHROMAT_FILE: MSMg01no298_d05.g1 PHD_FILE: MSMg01no298_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGGATCCGCGGAATTCTCTAC
CTTCTCTATATATTGTCTAATGGTTGGTGCACCAATCACGTGTCAATTCA
TGTATGTTTTCTGTCTCATTGTCTGAATGATTGTTTCGTTGTCTGAATGA
CTGACTGTTTTATGTTTCATGTTAAAAAGAAAAAAAAAATGGTTAAAATT
TTACCTGCTGAATCACTCTCAGTTTGCACAACTGAGGCTGATAGGCCCCT
CCCTTTAGCCAAAATCAAGCACAGCAGGAGAGGTCCTGCTGAAAAACTTA
GAATCTTCTTTCTCTTAGTTCTAATACAAATAAGCTGATAGTTGTTTTTC
CTAAAAAATTCTCTGCAAGTTTGTGATTATTGTGTTTAGTAAACTACAAA
GTGTTTTTTATCTTATAGTATAACTAAAAAGTAAAATTCTTTGATCTAAA
TTTGTAAGATTTGTGTAGCCACTTCATTTGGTTTTTGACTGGTCTTAGAG
GTATAAATATGATCTACATATCTTGGTCATAGAGAATTGGCTTTTACCCT
ATTTGTGTATGATTAAAAAGATGTTTCCCTGCGCATAAAGTTAACTTAAT
AGTACCAACTCACGCTCAGATTCATTTTCCAACAAAAGCTCCTGTCTTAA
ACCATTCCAGACAACTATTTCTCTAAAGATACCCCCAATCTATGATCACA
TTTTATGTAATTTCTTATTCTATAAAGAAAG
CATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAAGGAATGATCACACAAGAAAAT
AGACAAATTTCCATGGAAAGAAATGGCTGTGGTTGTGTTTCAGAGTAACT
GTTTAAAACATTCAAGGCCCTGGGTTTTATTTAACTCCAAAGCTGCAAAC
AAACTGATAACAACAACAAAAAACAAACATAAAAGTAGTTTGAGCACAAA
GAAGCACAGAGTTATTGAGGAAAAAAAAAACTACCAAAATCTTTAGACTA
CAAAATTGTCATGCCATGTCAGCTACTCGATAGCAAGTATAATCTAAAAC
AGAAATCTATAAGCTGTGTAGTTTCATGAGGATTGCATCCCCTAAGGAGA
TAGGAGCTCCACAGGAAGCCTTACAGAATCATCTAACCTGGCTGTTTGAG
GCTCTCAGAGACTGAACCACCAACAAAAGAACTTACATGTAATTGACCTA
GGTCCCCTGCACATATGTAGCAGATGTACAGCTTGGTCTTCATATGGGTC
CTGAACAACTGGAGTAGGGCCTATCCCCAAAGCTCTTGCCTGTATGTGGG
ATATGCACTTTCAGCTGTGATATGGACTTCCTTGTTTGCTCTCCATGACA
GCAGATGAGCCTAGACTCACCAAATTCTGAAGCTCCACGGATAGGAGATA
CCCAGGGATCTCCTACCTGCTCAAAAGAGAACTGAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_d05.g1 MSMg01no298_d05.g1 CHROMAT_FILE:
MSMg01no298_d05.g1 PHD_FILE: MSMg01no298_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:50 2005
         (554 letters)



>mm_chr8_104586906_104587859
          Length = 954

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaggaatgatcacacaagaaaatagacaaatttccatggaaagaaatggctgtggttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agaaggaatgatcacacaagaaaatagacaaatttccatggaaagaaatggctgtggttg 444

                                                                       
Query: 61  tgtttcagagtaactgtttaaaacattcaaggccctgggttttatttaactccaaagctg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 tgtttcagagtaactgtttaaaacattcaaggccctgggtttcatttaactccaaagctg 384

                                                                       
Query: 121 caaacaaactgataacaacaacaaaaaacaaacataaaagtagtttgagcacaaagaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaacaaactgataacaacaacaaaaaacaaacataaaagtagtttgagcacaaagaagc 324

                                                                       
Query: 181 acagagttattgaggaaaaaaaaaactaccaaaatctttagactacaaaattgtcatgcc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acagagttattgagggaaaaaaaaactaccaaaatctttagactacaaaattgtcatgcc 264

                                                                       
Query: 241 atgtcagctactcgatagcaagtataatctaaaacagaaatctataagctgtgtagtttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgtcagctactcgatagcaagtataatctaaaacagaaatctataagctgtgtagtttc 204

                                                                       
Query: 301 atgaggattgcatcccctaaggagataggagctccacaggaagccttacagaatcatcta 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 203 atgaggattgcatcccctaaggagataggagctccacaggaagccttagagaatcatcta 144

                                                                       
Query: 361 acctggctgtttgaggctctcagagactgaaccaccaacaaaagaacttacatgtaattg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 143 acctggctgtttgaggctctcagagactgaaccaccaacaaaagaacttacatgtaatgg 84

                                                                       
Query: 421 acctaggtcccctgcacatatgtagcagatgtacagcttggtcttcatatgggtcctgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  acctaggtcccctgcacatatgtagcagatgtacagcttggtcttcatatgggtcctgaa 24

                                  
Query: 481 caactggagtagggcctatcccc 503
           || ||||||||||||||||||||
Sbjct: 23  cacctggagtagggcctatcccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)