Query= MSMg01no298_g19.b1 MSMg01no298_g19.b1 CHROMAT_FILE:
MSMg01no298_g19.b1 PHD_FILE: MSMg01no298_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:06 2005
(675 letters)
>mm_chr8_78902635_78903708
Length = 1074
Score = 1178 bits (609), Expect = 0.0
Identities = 656/672 (97%), Gaps = 3/672 (0%)
Strand = Plus / Plus
Query: 5 gaattctagcattctctgagcccaaaattaaatgttttcttttataagttgctttaatca 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagcattctgtgagcccaaaattaaatgttttcttttataagttgctttaatca 264
Query: 65 agacgatagagaagtacctaaaacaggacccgaaatctacctgcaaggtcccaacattta 124
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacaatagagaagtaactaaaacaggacccgaaatctacctgcaaggtcccaacattta 324
Query: 125 aggattcaaacatttttctagagattagatcctatgcacatggatcaaagaaattcagac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 aggattcaaacatttttctagagattagatcctatgcacatggatcaaagaaattgagac 384
Query: 185 ttgtcttatctatgttactcttggttttgaagctcccaggctgataggcaaacattggaa 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtcttatctatgttacttttggttttgaagctcccaggctgataggcaaacattggaa 444
Query: 245 aaacaaagaggcaacagaactcacaccacaccatgaatcttgttttatccagcagccaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacaaagaggcaacagaactcacaccacaccatgaatcttgttttatccagcagccaga 504
Query: 305 ccaagctattactattttgagttcatatcctagaagtcacctaagaattcaggacatata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 ccaagctattactattttgagttcatatcctagaagtcacctaagaattcaggacatgta 564
Query: 365 ttgatgccttgttttgctttgcttttacctgttcacattatattcttatatttctcattg 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 ttgatgccttgttttgctttgcttttacctgttcaaattatattcttatatttctcattg 624
Query: 425 acatttttatatgtcttgtttccatcacacaaaaaaaaatagaaactcaaaacatcatca 484
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 625 acatttttatatgtcttgtttccatcacacacaaaaaa-tagaaactcaaaacatcatca 683
Query: 485 tgacagtttgagtctagactatatatattcttctgacatttacttttagggtcaagcgct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgacagtttgagtctagactatatatattcttctgacatttacttttagggtcaagcgct 743
Query: 545 gtgcctganacagagatgtataatgacacttttcctttatttcaatggggtagcta-ata 603
|||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| | |||
Sbjct: 744 gtgcctgaaacagagatgtataatgacagttttcctttatttcaatggggaagc-agata 802
Query: 604 atacactgtgcatttaaataacagcacacacagagaacattctccatacatatcaacaaa 663
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 803 atacagtgtgcatttaaataacagcacacacagagaaaattctccatacatatcaacaaa 862
Query: 664 tgtcattttaaa 675
||||||||||||
Sbjct: 863 tgtcattttaaa 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space: 707560
Effective search space used: 707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_g19.g1 MSMg01no298_g19.g1 CHROMAT_FILE:
MSMg01no298_g19.g1 PHD_FILE: MSMg01no298_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:06 2005
(649 letters)
>mm_chr8_79070388_79071436
Length = 1049
Score = 1172 bits (606), Expect = 0.0
Identities = 628/648 (96%), Gaps = 20/648 (3%)
Strand = Plus / Minus
Query: 1 ttatatgaatgaaggttccaagatttgttctctcatcaaatgttcccaagctataaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ttatatgaatgaaggttccaagatttgttctctcatcaaatgttcccaagctataaaatt 778
Query: 61 atgaactcatttgatagagggtttctaagaagacatagcctctgtgttaccacttctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atgaactcatttgatagagggtttctaagaagacatagcctctgtgttaccacttctcaa 718
Query: 121 agaggaaggtttattaaaatgcttacccaggttcaaaatcagctacaccaggactaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 agaggaaggtttattaaaatgcttacccaggttcaaaatcagctacaccaggactaggaa 658
Query: 181 gcttctatagctattgtcaaaggaggcttggctatgtcttgaacaatcagtagtagaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gcttctatagctattgtcaaaggaggcttggctatgtcttgaacaatcagtagtagaaac 598
Query: 241 ttgaactactagcttagttgtagtgttgatattgcagtcatgcggaattgggaagttatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttgaactactagcttagttgtagtgttgatattgcagtcatgcggaattgggaagttatg 538
Query: 301 gatttatggaagcttgtttctaggcttcagagaaaaaaataatgaaaataaatgtggcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gatttatggaagcttgtttctaggcttcagagaaaaaaataatgaaaataaatgtggcag 478
Query: 361 aaccagttgttgtgtaagagagtgggataccaagaaaagagtctctgagtggtgcaatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaccagttgttgtgtaagagagtgggataccaagaaaagagtctctgagtggtgcaatag 418
Query: 421 atattctaggatgctagatgccataaatggtggacatccatgagtatagctgagccaaac 480
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 417 atattcta--------------------ggtggacatccatgagtatagctgagccaaac 378
Query: 481 ccaaagagacaacatctttgttataaacagtaggaccagagaggtatggccaccaacatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccaaagagacaacatctttgttataaacagtaggaccagagaggtatggccaccaacatc 318
Query: 541 cactggtagacagacaatgtcaccagaagcccaaggtaatggacatggaactatggagtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cactggtagacagacaatgtcaccagaagcccaaggtaatggacatggaactatggagtt 258
Query: 601 ctgtgtttgctcagctggaagagatattgccctggtctttcctttata 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgtgtttgctcagctggaagagatattgccctggtctttcctttata 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
