BAC Information

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BAC

Clone NameMSMg01-298I09
Chromosome8 (Build37)
Map Location 121,509,556 - 121,509,852
singlet/doubletsinglet
Overlap geneCdh13
Upstream genenone
Downstream geneHsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298I09.T7 (MSMg01no298_i09.b1)MSMg01-298I09.TJ (MSMg01no298_i09.g1)
ACCAG425554AG425555
length734765
length of high quality
(start - end)
44 (18 - 61)299 (51 - 349)
definitionCHROMAT_FILE: MSMg01no298_i09.b1 PHD_FILE: MSMg01no298_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:14 2005CHROMAT_FILE: MSMg01no298_i09.g1 PHD_FILE: MSMg01no298_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCCTGACGCCTTTACTAATGTGATTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTACTTACTTACTTACTTCCTTCCTTCGATCCTTCCTTCC
TTCCTTCATTCCGCCGTCTCTCCCTCCCTCCCTCCGTCCCTGCCTGCCTC
CTTTCTCTCTCTGTCTCTCTCTCTCGCTGTGTGAGTCTGTGTTGCTTGCG
GTGAGGGCAATCATACATACTTACGTACTTGCTTAGAGGCAGGCAGTCGG
GGGGGGGGGATCTTTTGGGGTGGGGGCGTTGTGTGTTTGCCTCGGGGTGT
ATAGAACGAACCTTAATATAGTTGGTTTTATACCAGAATATCAAACGGTG
GTGGTGGCGGGAGCACACGGGGCGTTATAACCCGAATTGTATTAGTGAAG
ATATGGAAGTACCAAATCAAAGGAGGAAGGAGGACAAGGGAGGGTGGCGG
TTAAAGAAGCGGTTGGGTATAAGGCGGGTCGGGGTGGAGGGGACGATATA
TTTCTAGCCCCGCAGTATATGTATGCGAGAGGTGTATTGGATATGCGTGG
ATTTATGTGTCCCGGGAGCGAATTACTCGGGTGCGTTTTATTAGGGTATC
GTGCGAGAAGATTAGAGGGGGGGGATTCGGGCTGTGATTGCAAGCTGTTA
TATAACAGATATGCGTGCCAGCCGGATGCATGTCTTATACCCGCCACTCG
AGGGAGAGGTAGGTAGATATCACGTGTGCCTAGN
TGGCGGCCGCCTGGTTTCAGACTGGGGGTNGAACTATAGAAGGTCTCGCG
AAATTCTCATTTACAGATAAGGAGCAGGCTCTTGGTGAGCAGAGGACTCA
CGTGAGTCTTGGGTTGCCCCTCAAGTCTCTCCTGAACACATGCATTTCAA
GCAAAGATCAGTAGAAAGGAGGTCACCTTCAGCCCTTAATCCATAAGAGG
AAGGGGACCAGGGCCACGGGTGCTCGATCCATCCAGGGGTCAGGGGTCAA
TGGAAGGGTTTTTTTTTCTCCAATATTTAGCAGGGTTCTCCAGAAAAACA
GAATTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GCCCCCAAACAACTACAAGATTTTTTGTATCTTTATCTTATTCCCATATC
TGCCCCCCCTTTCTTTATAACTGCCGTGTCTCTCGCCGTTTTGTCTCGTT
CGTTTCCCTTCCTTTGTCCTCTTTGGCCTCTTTACAATTATCCAATTTAT
CTATTTTTATCCATAATATTCATTCATACTTTCATACCTTTTAATTCACC
TCCCCCACCCCCCATTTCCCCTCCCCCCCCCTTTTTTTTACACCCCACCT
ACAAACTTTATCCTCTATACACAATTCTCCCCAATATTCATAACCCTCCC
CCCCCCCCTTTCACTATAAACCTCCTATTTCCCAATCATATATTTTTACT
TTTTAGCCCCTCCCGATTTTTACCTTTTCCCTTTCTCCCCCCTTTTTTTA
TATCAAATAATATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_i09.g1 MSMg01no298_i09.g1 CHROMAT_FILE:
MSMg01no298_i09.g1 PHD_FILE: MSMg01no298_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:14 2005
         (299 letters)



>mm_chr8_121509355_121510055
          Length = 701

 Score =  540 bits (279), Expect = e-158
 Identities = 292/297 (98%), Gaps = 2/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   aattctcatttacagataaggagcaggctcttggtgagcagaggactcacgtgagtcttg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aattctcatttacagataaggagcaggctcttggtgagcagaggactcacgtgagtcttg 261

                                                                       
Query: 62  ggttgcccctcaagtctctcctgaacacatgcatttcaagcaaagatcagtagaaaggag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggttgcccctcaagtctctcctgaacacatgcatttcaagcaaagatcagtagaaaggag 321

                                                                       
Query: 122 gtcaccttcagcccttaatccataagaggaaggggaccagggccacgggtgctcgatcca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtcaccttcagcccttaatccataagaggaaggggaccagggccacgggtgctcgatcca 381

                                                                       
Query: 182 tccaggggtcaggggtcaatggaagggttttttttt--ctccaatatttagcagggttct 239
           ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 382 tccaggggtcaggtgtcaatggaagggtttttttttttctccaatatttagcagggttct 441

                                                                    
Query: 240 ccagaaaaacagaattgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 296
           |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccagaaaaacagaattgtggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 701
Length adjustment: 9
Effective length of query: 290
Effective length of database: 692
Effective search space:   200680
Effective search space used:   200680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)