BAC Information

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BAC

Clone NameMSMg01-299D21
Chromosome8 (Build37)
Map Location 45,031,112 - 45,031,296
singlet/doubletsinglet
Overlap genenone
Upstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299D21.T7 (MSMg01no299_d21.b1)MSMg01-299D21.TJ (MSMg01no299_d21.g1)
ACCAG426072AG426073
length739750
length of high quality
(start - end)
187 (455 - 641)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no299_d21.b1 PHD_FILE: MSMg01no299_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:07 2005CHROMAT_FILE: MSMg01no299_d21.g1 PHD_FILE: MSMg01no299_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACAATTTGCGGCGCTAAANGAAGGACCATAGTTTGTCTTNGACCGGAANN
ANAAATATTTTTCGGCACCCTGGGNGNNNNCCNNNGAAAANNGNNCANGC
ANNCNGAAAANCNTTACAGACCCCCCCCANNGGNCCNCNNCNNCNNCCNG
GNACCAAAGGGNCCNCCNNCANGAAGNGGNACNNAGCNGAAAGNGNNNNN
CAAGNNNAAGAGNNGNGNCAGACNAGNNGGCANNNAACNACAGAANCATT
TTTATACGTAGATAAGGAGACGTTAGCTTCTCTTTTTCCTGTATTTATTC
ACTTTTATATTCTTGTATTTATTTTTGAGCNAAGANNNCAAGCACNACAN
NGAANAGGTTTTTTTTTCCTGGGGCANNNCCCGTCTCAGTCTAGACTCAT
AAAGATAAGTATCACATTTTCTCTCAAAAAAAAACCATCCCTCACGCTCC
TTTGTATTGTTTTGAAGAACATTTTAAATACTATTTTCTCTTTAGTTAAA
ATTGTGTGAGTTATATGATAAAAATACATGCAATAATTCTAAAGGGAAAG
GCAAAATGCTGGCATAATTAAAATAATTTTTATAATTATGGACATATTTA
GTATACTTAGCAGCAAAACAATTTGACTGTTATTCCTTCCCACTCTCAAT
TTGGATACTTTTTTTATCTTTACCATACTGTCTCAGAAAGCATCTTCCTT
AATAGGTACTCCATCCTGGTCAGTGAGGATGCTAACTGA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTT
TAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTCACACA
ATATGTACTCACTGATAACTGGATATTAACCCAAAACCTAGGATACCCAA
GATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGAC
TGAAATGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCAT
GGAAGGAGTTACAGAGACAAAGTTTGTAGCTGAGATGAAAGGATGGACCA
TGTAGAGACTGCCATATTTATTTATCCACCCCATAATCAGCATCCAAACG
CTGACANCATTGCATACACTACCAAGATTTTATAGAAAGGACCCAGATGT
GGCTGTCTCTTGTGAGACTATGTCGGGGCCTAGCAAACACAGAAGTGGAT
GCTCACAGTCAGCTAATTGATGGATCACAGGGCTCCCAATGGAGGAGCTA
CAGAAAGTACCCAAGGAGCTAACGGGATCTGCAACCCTATAGGTGGAACA
ACATTATAAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATG
TATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGA
CACGCAAACTTTATATGCCCCAGTACAGGGGAACGGCAGGGCCAAAAAGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_d21.b1 MSMg01no299_d21.b1 CHROMAT_FILE:
MSMg01no299_d21.b1 PHD_FILE: MSMg01no299_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:07 2005
         (187 letters)



>mm_chr8_45030912_45031498
          Length = 587

 Score =  327 bits (169), Expect = 3e-94
 Identities = 181/185 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgttttgaagaacattttaaatactattttctctttagttaaaattgtgtgagttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgttttgaagaacattttaaatactattttctctttagttaaaattgtgtgagttat 260

                                                                       
Query: 61  atgataaaaatacatgcaataattctaaagggaaaggcaaaatgctggcataattaaaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atgataaaaatacatgcaataattctaaagggaaaggcaaaatgctggtataattaaaat 320

                                                                       
Query: 121 aatttttataattatggacatatttagtatacttagcagcaaaacaatttgactgttatt 180
           |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 321 aatttttataattatggatatatttagtatacttagcagtaaaacaacttgactgttatt 380

                
Query: 181 ccttc 185
           |||||
Sbjct: 381 ccttc 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)