BAC Information

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BAC

Clone NameMSMg01-299I20
Chromosome8 (Build37)
Map Location 18,255,948 - 18,407,168
singlet/doubletdoublet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299I20.T7 (MSMg01no299_i20.b1)MSMg01-299I20.TJ (MSMg01no299_i20.g1)
ACCAG426293AG426294
length762758
length of high quality
(start - end)
523 (78 - 600)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no299_i20.b1 PHD_FILE: MSMg01no299_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:30 2005CHROMAT_FILE: MSMg01no299_i20.g1 PHD_FILE: MSMg01no299_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,255,948 - 18,256,470)(18,406,881 - 18,407,168)
sequence
TCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTTTAATGTTGCCCTATTGGTGGCAGTCCTTACTACCAAACAA
TAACTTGTTCTTCCTGTGATATATTAAGAAAATAGAAGAAATAGATAGCT
CTACGCACTTGGAAATACAAAGACATCAGAGATTTCAAGGCAAAAGTACC
AACATCTCCAAGGTGGTTAAAATGGTTGAGAGTGACATAAGAAAAACAAC
CATCCAGAAAAGGATGTACAATGGACAAATACAGATGCAGAACAGTGGAG
GCTCCACTTGAGAGGTAGAGACAAAAGGATATGTAGAGGCAGGGGACCTT
CGCAGACAAAGCAGGAGAATACTAAGGCTCTTCTTCATGGCACTGAAGGA
ATGACAGGTTCCACAGTGCACCCAGCACAGGAGAGAGGTATCAGGAAGAA
TTCACACAGCTGCTTGGTGCCCTGGAGCTGTGGCCCTTGGATTTGCATGC
CTTGACATCCCTACCTGACCTCCACATTCACCCTCCCCTTGCCTTTCATA
TTTAACTTTCATCTTACACTTACAGCCCACCCTCACCTCAGCCCCACCCT
TAGTCTCAGATCCACCTTCACACCCCCACTCTGCAAGGAAATCAAAACAC
CACTAAATCCAAAGGTCTGCATTCTGCACTCCCTGGGCATCTAGATGGGA
CAGCATTCCTCTGCCCAACAAGACAAATCTCGAAGGAATTCCCTCCTATT
GAAGAAAAAAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATGTCCCGGTAGATACTGGTAC
CTTTAACCTCTTAAAAATTCTAGAGAATGTACCTGCGCATTGACAATATT
CAGAGGAATATCAAACCCTTGAGTCTTCTGCTGAGGGATGGATGTTTCTG
TAGTAACCTGGTGGGGTCTTGGCAGGAGCTACATAGACACAAGTTTGAAC
ACACTCTGTTCACTTCAGTAAGTAGGAGATGTTGGAGAATTGGCAGTAAC
CTTTACAAATGAGATCATTTCTAATTTCCAAATTGCTATGAGGTCACCTT
TTATTTATTTTTTAATCAGAGTGCAGGGTATAAATAGCCACTTTCTGGTG
CTAGTTTCACTCACCACCCCCCATTTAATTGTTCATTTGAGAAATGGCCA
TTCCTCCAGTACATGCTGCATAGCTTTACCATCTAGCATTTGCAAACCCC
CGCCCTCTGCTGACCTCCTCCCTTGAGTGGTGCAGTGTTGGGAGAGTGAG
TCTGACAAGCACAAGGTGGCATCTCAACATTACAAATTACAGTTCTCTGG
AGCTCTCCAGGGTCCTGATCATGATACTAAGCCTGCCAAAGGTAGCATCC
CTCTGTTATCAAGCATGTAGGCAGAAAGGCTCCACTCTTAACTAACTTGC
CCCTGTGTGGCTAATGCAGAATCTTCCTTGGTGCCCTCCTCCAATAACCT
TCCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_i20.b1 MSMg01no299_i20.b1 CHROMAT_FILE:
MSMg01no299_i20.b1 PHD_FILE: MSMg01no299_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:30 2005
         (523 letters)



>mm_chr8_18255748_18256670
          Length = 923

 Score =  872 bits (451), Expect = 0.0
 Identities = 505/523 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcagtccttactaccaaacaataacttgttcttcctgtgatatattaagaaaatagaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tggcagtccttactaccaaacaataacttgttcttcctgtgacatattaagaaaatagaa 260

                                                                       
Query: 61  gaaatagatagctctacgcacttggaaatacaaagacatcagagatttcaaggcaaaagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gaaatagatagctctacgcacttggaaatacaaagacatcagagatttcaaggcaaaaat 320

                                                                       
Query: 121 accaacatctccaaggtggttaaaatggttgagagtgacataagaaaaacaaccatccag 180
           | |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaacatatccaaggtgattaaaatggttgagagtgacataagaaaaacaaccatccag 380

                                                                       
Query: 181 aaaaggatgtacaatggacaaatacagatgcagaacagtggaggctccacttgagaggta 240
           ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 381 aaaaggatggacaatggacaaatacagatgcagaacaatggaggctgcacttgagaggta 440

                                                                       
Query: 241 gagacaaaaggatatgtagaggcaggggaccttcgcagacaaagcaggagaatactaagg 300
           |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gagacaaaaggaaatgtagaggcagggggccttcgcagacaaagcaggagaatactaagg 500

                                                                       
Query: 301 ctcttcttcatggcactgaaggaatgacaggttccacagtgcacccagcacaggagagag 360
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 501 ctcttcttcatggcactgaaggaatgacaggttccacagtgtaaacagcacaggagagag 560

                                                                       
Query: 361 gtatcaggaagaattcacacagctgcttggtgccctggagctgtggcccttggatttgca 420
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaccaggaagaattctcacagctgcttggtgccctggagctgtggcccttggatttgca 620

                                                                       
Query: 421 tgccttgacatccctacctgacctccacattcaccctccccttgcctttcatatttaact 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccttgacacccctacctgacctccacattcaccctccccttgcctttcatatttaact 680

                                                      
Query: 481 ttcatcttacacttacagcccaccctcacctcagccccaccct 523
           ||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 681 ttcatcttacatttagagcccaccctcacctcagccccaccct 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no299_i20.g1 MSMg01no299_i20.g1 CHROMAT_FILE:
MSMg01no299_i20.g1 PHD_FILE: MSMg01no299_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:31 2005
         (288 letters)



>mm_chr8_18406681_18407368
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtcccggtagatactggtacctttaacctcttaaaaattctagagaatgtacctgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tatgtcccggtagatactggtacctttaacctcttaaaaattctagagaatgtacctgcg 429

                                                                       
Query: 61  cattgacaatattcagaggaatatcaaacccttgagtcttctgctgagggatggatgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cattgacaatattcagaggaatatcaaacccttgagtcttctgctgagggatggatgttt 369

                                                                       
Query: 121 ctgtagtaacctggtggggtcttggcaggagctacatagacacaagtttgaacacactct 180
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 368 ctgtagtaacctggtggggtcttggcaggagatacatggacacaagtttgaacacactct 309

                                                                       
Query: 181 gttcacttcagtaagtaggagatgttggagaattggcagtaacctttacaaatgagatca 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gatcacttcagtaagtaggagatgttggagaattggcagtaacctttacaaatgagatca 249

                                                           
Query: 241 tttctaatttccaaattgctatgaggtcaccttttatttattttttaa 288
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttctaaattccaaattgctatgaggtcaccttttatttattttttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)