MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-299K09
Chromosome	8 (Build37)
Map Location	110,122,908 - 110,123,468
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
Downstream gene	LOC100041744, LOC668038
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cdh1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12550 MGI:88354
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmco7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:272538 MGI:2142786
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Has3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15118 MGI:109599
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5830457O10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214987 MGI:2443370
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cirh1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21771 MGI:1096573
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG234703 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234703 MGI:3648679
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 mRNAs, 1005 ESTs, 9 Proteins

name	Sntb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20650 MGI:101771
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vps4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:116733 MGI:1890520
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cog8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97484 MGI:2142885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nip7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66164 MGI:1913414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmed6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66269 MGI:1913519
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Terf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21750 MGI:1195972
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG667847 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667847 MGI:3647574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 32 mRNAs, 2652 ESTs, 10 Proteins

name	Cyb5b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66427 MGI:1913677
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042791 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042791
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 2115 ESTs, 2 Proteins

name	Nfat5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54446 MGI:1859333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Nqo1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18104 MGI:103187
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nob1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67619 MGI:1914869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wwp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66894 MGI:1914144
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042812 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042812
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 807 ESTs, 7 Proteins

name	Psmd7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17463 MGI:1351511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041744 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041744
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC668038 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668038
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins pseudo : _no_value

name	Cdh1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129809 GeneID:12550 MGI:88354
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cadherin 1 transcript_id : NM_009864.2

name	Tmco7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27370559 GeneID:272538 MGI:2142786
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane and coiled-coil domains 7 transcript_id : NM_173037.1

name	Has3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351756 GeneID:15118 MGI:109599
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hyaluronan synthase 3 transcript_id : NM_008217.3

name	5830457O10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84000433 GeneID:214987 MGI:2443370
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5830457O10 gene transcript_id : NM_145412.3

name	Cirh1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982958 GeneID:21771 MGI:1096573
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cirrhosis, autosomal recessive 1A (human) transcript_id : NM_011574.1

name	EG234703 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383798 GeneID:234703 MGI:3648679
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 mRNAs, 1005 ESTs, 9 Proteins product : predicted gene, EG234703 transcript_id : XM_134291.7

name	Sntb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382839 GeneID:20650 MGI:101771
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : syntrophin, basic 2 transcript_id : NM_009229.3

name	Vps4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18699725 GeneID:116733 MGI:1890520
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vacuolar protein sorting 4a (yeast) transcript_id : NM_126165.1

name	Cog8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66392580 GeneID:97484 MGI:2142885
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : component of oligomeric golgi complex 8 transcript_id : NM_139229.3

name	Nip7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13928673 GeneID:66164 MGI:1913414
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear import 7 homolog (S. cerevisiae) transcript_id : NM_025391.1

name	Tmed6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383925 GeneID:66269 MGI:1913519
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane emp24 protein transport domain containing 6 transcript_id : NM_025458.2

name	Terf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133904141 GeneID:21750 MGI:1195972
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : telomeric repeat binding factor 2 transcript_id : NM_009353.2

name	Terf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133904139 GeneID:21750 MGI:1195972
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : telomeric repeat binding factor 2 transcript_id : NM_001083118.1

name	EG667847 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259083 GeneID:667847 MGI:3647574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 32 mRNAs, 2652 ESTs, 9 Proteins product : predicted gene, EG667847, transcript variant 2 transcript_id : XM_001004356.2

name	Cyb5b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373832 GeneID:66427 MGI:1913677
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome b5 type B transcript_id : NM_025558.3

name	LOC100042791 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259084 GeneID:100042791
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 1812 ESTs, 2 Proteins product : similar to ribosomal protein, transcript variant 1 transcript_id : XM_001479484.1

name	LOC100042791 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259086 GeneID:100042791
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 2114 ESTs, 2 Proteins product : similar to ribosomal protein, transcript variant 2 transcript_id : XM_001479493.1

name	Nfat5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:26080414 GeneID:54446 MGI:1859333
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor of activated T-cells 5 transcript_id : NM_133957.2

name	Nfat5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9055287 GeneID:54446 MGI:1859333
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor of activated T-cells 5 transcript_id : NM_018823.1

name	Nqo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400772 GeneID:18104 MGI:103187
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NAD(P)H dehydrogenase, quinone 1 transcript_id : NM_008706.3

name	Nob1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344103 GeneID:67619 MGI:1914869
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) transcript_id : NM_026277.2

name	Wwp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543965 GeneID:66894 MGI:1914144
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WW domain containing E3 ubiquitin protein ligase 2 transcript_id : NM_025830.3

name	LOC100042812 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259088 GeneID:100042812
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 807 ESTs, 7 Proteins product : similar to ribosomal protein S26 transcript_id : XM_001479547.1

name	Psmd7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754723 GeneID:17463 MGI:1351511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 transcript_id : NM_010817.1

name	LOC100041744 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259029 GeneID:100041744
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041744 transcript_id : XM_001476934.1

name	Cdh1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753374 CCDS:CCDS22638.1 GeneID:12550 MGI:88354
definition	GO_component : GO:0005912 - adherens junction [Evidence IDA]; GO:0045177 - apical part of cell [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0008013 - beta-catenin binding [Evidence IPI]; GO:0005509 - calcium ion binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0007156 - homophilic cell adhesion [Evidence IEA]; GO:0051260 - protein homooligomerization [Evidence IDA]; GO:0019538 - protein metabolism [Evidence IDA]; GO:0043281 - regulation of caspase activity [Evidence IDA] codon_start : 1 note : uvomorulin; E-cadherin product : cadherin 1 protein_id : NP_033994.1

name	Tmco7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370560 CCDS:CCDS22639.1 GeneID:272538 MGI:2142786
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : transmembrane and coiled-coil domains 7 protein_id : NP_766625.1

name	Has3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680173 CCDS:CCDS22640.1 GeneID:15118 MGI:109599
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0050501 - hyaluronan synthase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hyaluronan synthase 3 protein_id : NP_032243.1

name	5830457O10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84000434 GeneID:214987 MGI:2443370
definition	codon_start : 1 product : hypothetical protein LOC214987 protein_id : NP_663387.3

name	Cirh1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982959 GeneID:21771 MGI:1096573
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : cirrhosis, autosomal recessive 1A protein_id : NP_035704.1

name	EG234703 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20886513 GeneID:234703 MGI:3648679
definition	codon_start : 1 product : similar to QM protein protein_id : XP_134291.1

name	Sntb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678059 CCDS:CCDS22642.1 GeneID:20650 MGI:101771
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : syntrophin, basic 2 protein_id : NP_033255.1

name	Vps4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18699726 GeneID:116733 MGI:1890520
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0048471 - perinuclear region [Evidence IDA]; GO:0005773 - vacuole [Evidence IEA] GO_function : GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence ISS] codon_start : 1 note : vacuolar protein sorting protein 4a product : vacuolar protein sorting 4a protein_id : NP_569053.1

name	Cog8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66392581 CCDS:CCDS22643.1 GeneID:97484 MGI:2142885
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : conserved oligomeric Golgi complex protein 8 product : component of oligomeric golgi complex 8 protein_id : NP_631975.3

name	Nip7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13928674 CCDS:CCDS22644.1 GeneID:66164 MGI:1913414
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Saccharomyces cerevisiae Nip7p homolog protein_id : NP_079667.1

name	Tmed6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384864 CCDS:CCDS22645.1 GeneID:66269 MGI:1913519
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : transmembrane emp24 protein transport domain containing 6 protein_id : NP_079734.1

name	Terf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133904142 CCDS:CCDS22646.1 GeneID:21750 MGI:1195972
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043047 - single-stranded telomeric DNA binding [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : telomeric repeat binding factor 2 isoform 1 protein_id : NP_033379.2

name	Terf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133904140 GeneID:21750 MGI:1195972
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043047 - single-stranded telomeric DNA binding [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : telomeric repeat binding factor 2 isoform 2 protein_id : NP_001076587.1

name	EG667847 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94383784 GeneID:667847 MGI:3647574
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001004356.1

name	Cyb5b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542438 CCDS:CCDS22647.1 GeneID:66427 MGI:1913677
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : cytochrome b5 outer mitochondrial membrane product : cytochrome b5 outer mitochondrial membrane precursor protein_id : NP_079834.2

name	LOC100042791 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259085 GeneID:100042791
definition	codon_start : 1 product : similar to ribosomal protein isoform 1 protein_id : XP_001479534.1

name	LOC100042791 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259087 GeneID:100042791
definition	codon_start : 1 product : similar to ribosomal protein isoform 2 protein_id : XP_001479543.1

name	Nfat5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055288 CCDS:CCDS22648.1 GeneID:54446 MGI:1859333
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence ISS] GO_process : GO:0001816 - cytokine production [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006351 - transcription, DNA-dependent [Evidence ISS] codon_start : 1 note : isoform b is encoded by transcript variant b; tonicity-responsive enhancer binding protein; Rel domain-containing transcription factor product : nuclear factor of activated T-cells 5 isoform b protein_id : NP_061293.1

name	Nfat5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270033 GeneID:54446 MGI:1859333
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence ISS] GO_process : GO:0001816 - cytokine production [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006351 - transcription, DNA-dependent [Evidence ISS] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant a; tonicity-responsive enhancer binding protein; Rel domain-containing transcription factor product : nuclear factor of activated T-cells 5 isoform a protein_id : NP_598718.1

name	Nqo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94400773 GeneID:18104 MGI:103187
definition	GO_function : GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IDA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IMP] codon_start : 1 note : NAD(P)H menadione oxidoreductase 1, dioxin inducible; diaphorase 4 (NADH/NADPH); NAD(P)H dehydrogenase (quinone) product : NAD(P)H dehydrogenase, quinone 1 protein_id : NP_032732.3

name	Nob1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794454 CCDS:CCDS22649.1 GeneID:67619 MGI:1914869
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005730 - nucleolus [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030490 - processing of 20S pre-rRNA [Evidence ISS]; GO:0042274 - ribosomal small subunit biogenesis [Evidence ISS] codon_start : 1 note : PSMD8 binding protein 1 product : nin one binding protein protein_id : NP_080553.1

name	LOC100042812 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259089 GeneID:100042812
definition	codon_start : 1 product : similar to ribosomal protein S26 protein_id : XP_001479597.1

name	Wwp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385304 GeneID:66894 MGI:1914144
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA] codon_start : 1 note : WW domain-containing protein 4 product : WW domain-containing protein 2 protein_id : NP_080106.1

name	Psmd7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754724 CCDS:CCDS22650.1 GeneID:17463 MGI:1351511
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] codon_start : 1 note : Moloney leukemia virus 34 product : proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 protein_id : NP_034947.1

name	LOC100041744 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259030 GeneID:100041744
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476984.1

name	LOC668038 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259090 GeneID:668038
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins product : similar to ribosomal protein pseudo : _no_value transcript_id : XR_034273.1

clone name	MSMg01-519J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338A02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-303K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072K08
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-299K09.T7 (MSMg01no299_k09.b1)	MSMg01-299K09.TJ (MSMg01no299_k09.g1)
ACC	AG426362	AG426363
length	743	744
length of high quality (start - end)	372 (45 - 416)	671 (74 - 744)
definition	CHROMAT_FILE: MSMg01no299_k09.b1 PHD_FILE: MSMg01no299_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:38 2005	CHROMAT_FILE: MSMg01no299_k09.g1 PHD_FILE: MSMg01no299_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:38 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCCAATTGTTCCCTCAGTCTGCAGACACAGGTTTCTTCCAGGAGTTTT GTTTTGTTTTCTGTTCCTAGCCAGATAGCTTCCTTTCAGGAATTGTTTTT TCTTGAGTTGGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACCAGATC TGTAGACTAGGCTGGTCTTGAACTCACAGAGACATGCCTACCTCTTTCTC TTGAATGCTGGGATGAAAGGCTTGGGCCACTACCACATTTCAGTCTGCTT TCTTTGGCTTGTTTGTTTGTTTTAGAATTATTTATTTAATGTATATGAGT ACATTGTCACTGTATTCAGACACAGCAGAAGAGGGCATCAGATCTCATTA CAGATGGTTGTGACCCACCACGCGGTTGCTAGGAATTGAACTCAGGACCT TTGGAAGAATAGTCACTGTTCTTAACCACTGAGCCATCTCTCTAGCCCCA ATCTGCTTTCTTATAGAATCTAGGACCACCAGCCCAGGGATGGCACCTCC CACAATGGTCTGGGTCCAACCCCATCAATCACTAATTCAGGAAATGCCCT ACAGTTGGATCATACAGAGGAGCAGTTCTCAGTTGCGGGTCCCTCTTCAG ACGACTCTAGCTTGTGTCAAGTTGACATAATACTAGTCAGGACATCGGAG ACATGGAATGACACTGTACTGTCTTTACGTTTCTGTCATGTTT	CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXTAGGCCAGCCTGGACCACTGTGTGAGA TCCTGTCTCTAAAACTAAACAAAATCGGCTAACGAGAGAACTCAGCAGGT AAAGACACCTACCTGCTGCCAAACCCAAGGATCTGAGTTCAATCCCTGGG ACTCATACCGTAGCAGAGGGACCCGACTCCCAAAAGTTGTCTTCTGATCT CTGCACACGCGCGGTGGCATTTTTGCGCATACATACATGCACGCGCACAA AACGAGAAAAATGCAATATTATAATTTTAGGCAAAAACAATGTCAGAGTG GTAAATAAATAAATAAATAAATAAATAAATAAAAGTGGGCTCAAGGCACT TGAACATAGACCTGGCCAATTTAAGGACCCAGAAGTGATCTCAGCCGCAG AGCGCTCGCCCAGCATGGACAAAGCCCAAACCATAAAAGGCACTTCTCGT TTGTTTATTTCGGGTTAACTTAAGGAGTTGTTTTTATTAAAATAGGCACC ATGTTTAACCAAAGGAAGAGATAAATTCAAAGTGAAGCTCCAGCGAGGTC CCTGCTGAAGCAGCTCCCGAAGCCGCCTGTGAGCCCCTGGGCGCTCTTTT CCTAATCTCAGTTGAAGGTACTTCATTCGCAAGCTTAGTACCTCGTTTGA ATCGTTTGAATCACAGCAGCTTCCAACACCGATCTTGAAAGAAN
quality values	Open. Hide. 6 6 7 9 9 9 16 25 41 43 37 37 32 31 31 37 23 23 25 28 28 30 48 48 30 28 28 25 23 19 23 9 9 8 8 8 8 9 12 13 14 16 21 21 29 32 41 47 38 36 36 33 44 39 33 33 30 23 30 13 13 12 11 8 6 6 6 13 18 30 35 37 37 37 37 37 47 36 36 36 36 36 38 59 59 59 59 59 47 47 42 42 47 47 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 32 32 20 20 20 28 32 48 57 68 68 68 68 68 68 68 68 68 68 68 50 51 50 50 50 50 59 59 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 44 43 43 48 57 44 50 37 37 43 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 59 57 57 57 43 43 43 43 43 43 43 43 46 43 43 43 43 43 48 59 59 59 59 57 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 50 50 59 59 59 59 59 36 30 23 23 12 12 11 11 8 8 8 8 8 8 8 15 23 47 59 59 59 59 59 47 47 53 50 50 50 48 48 48 57 57 48 48 48 48 48 57 57 59 59 48 46 46 46 47 47 43 43 43 46 43 48 48 57 57 57 57 57 57 59 57 57 57 57 57 68 68 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 59 50 48 48 57 44 57 57 57 57 57 68 68 68 59 59 59 59 59 59 59 59 59 50 50 35 35 43 50 52 52 52 57 43 43 27 27 27 43 38 44 52 52 43 57 50 54 57 57 57 52 52 52 59 52 52 52 52 52 52 52 52 52 57 57 57 57 57 57 57 44 44 38 37 37 37 37 50 44 43 37 37 37 37 43 50 50 57 47 47 47 43 44 28 18 12 20 20 30 38 46 37 44 27 31 19 21 15 22 24 37 32 37 23 20 13 14 8 8 8 12 18 23 15 29 29 28 29 31 24 18 11 11 11 27 21 42 36 36 24 26 16 16 13 18 18 18 18 12 19 16 17 15 21 21 21 22 32 26 26 32 32 35 34 32 25 26 23 18 18 19 22 15 12 11 12 12 11 11 11 12 12 15 19 21 25 23 28 31 24 27 15 15 14 19 18 24 17 15 10 10 10 15 11 11 12 15 22 15 11 11 18 23 18 20 20 10 9 13 10 8 8 8 10 16 14 11 6 6 6 7 11 6 6 8 6	Open. Hide. 6 6 6 10 8 8 9 10 23 12 18 10 9 10 22 30 33 33 50 50 53 50 50 50 50 47 47 25 21 11 9 7 8 6 6 6 6 6 10 13 14 21 13 15 28 27 12 11 11 26 26 44 39 37 37 25 17 9 9 8 8 8 9 9 12 15 22 17 30 33 33 33 33 48 50 50 50 50 53 53 53 53 57 57 43 43 43 47 47 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 54 54 54 47 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 53 50 50 50 50 50 39 47 22 19 10 10 10 10 11 15 19 34 30 59 59 59 59 48 59 59 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 48 48 48 48 48 48 59 59 59 59 59 59 59 57 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 59 59 57 57 57 57 50 50 59 59 47 47 46 34 30 28 14 11 11 11 11 11 12 18 30 32 41 43 43 48 48 48 48 57 57 57 57 57 48 48 48 57 57 57 57 48 48 54 54 43 43 43 57 57 57 57 54 54 54 59 54 54 54 48 48 59 59 59 57 57 48 48 48 48 47 57 57 54 54 57 57 57 57 57 57 57 57 59 59 68 68 59 59 59 57 57 57 59 59 59 59 43 43 43 59 59 59 59 57 57 57 57 57 57 57 50 57 57 57 57 57 57 57 57 57 57 57 59 50 43 43 43 47 57 59 59 57 57 57 59 57 54 54 54 48 59 48 48 48 59 59 59 57 57 57 54 54 54 57 57 54 57 54 54 54 54 54 59 57 54 57 54 48 48 48 48 48 48 43 57 48 48 48 48 48 57 48 59 48 59 59 46 47 43 46 46 48 57 57 48 48 48 48 46 46 46 41 41 41 39 31 31 39 37 41 41 41 41 41 46 47 41 43 41 41 32 31 41 41 47 47 46 40 40 37 37 28 33 37 47 41 57 48 48 48 48 46 46 46 43 37 37 37 31 31 32 32 31 41 39 34 32 28 28 34 36 41 37 34 36 31 35 36 39 34 41 39 39 28 34 23 23 23 32 32 37 37 26 36 30 30 17 17 21 21 28 24 22 22 30 32 39 37 39 37 37 36 31 36 25 30 26 20 24 21 22 28 33 32 35 35 37 28 22 17 17 15 18 18 30 34 31 32 29 28 28 27 23 26 35 31 22 10 10 10 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no299_k09.g1 MSMg01no299_k09.g1 CHROMAT_FILE:
MSMg01no299_k09.g1 PHD_FILE: MSMg01no299_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:38 2005
         (671 letters)



>mm_chr8_110122398_110123468
          Length = 1071

 Score = 1042 bits (539), Expect = 0.0
 Identities = 557/565 (98%), Gaps = 4/565 (0%)
 Strand = Plus / Minus

                                                                        
Query: 106  ggatctgagttcaatccctgggactcataccgtagcagagggacccgactcccaaaagtt 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 ggatctgagttcaatccctgggactcataccgtagcagagggacccgactcccaaaagtt 1012

                                                                        
Query: 166  gtcttctgatctctgcacacgcgcggtggcatttttgcgcatacatacatgcacgcgcac 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 gtcttctgatctctgcacacgcgcggtggcatttttgcgcatacatacatgcacgcgcac 952

                                                                        
Query: 226  aaaacgagaaaaatgcaatattataattttaggcaaaaacaatgtcagagtggtaaataa 285
            ||||||||||||||||||||| | |||||||||||||||||||||||||||||    |||
Sbjct: 951  aaaacgagaaaaatgcaatataaaaattttaggcaaaaacaatgtcagagtgg----taa 896

                                                                        
Query: 286  ataaataaataaataaataaataaaagtgggctcaaggcacttgaacatagacctggcca 345
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 895  ataaataaataaataaataaataaaagtgggctcaaggcacttgaacatagacctggtta 836

                                                                        
Query: 346  atttaaggacccagaagtgatctcagccgcagagcgctcgcccagcatggacaaagccca 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  atttaaggacccagaagtgatctcagccgcagagcgctcgcccagcatggacaaagccca 776

                                                                        
Query: 406  aaccataaaaggcacttctcgtttgtttatttcgggttaacttaaggagttgtttttatt 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  aaccataaaaggcacttctcgtttgtttatttcgggttaacttaaggagttgtttttatt 716

                                                                        
Query: 466  aaaataggcaccatgtttaaccaaaggaagagataaattcaaagtgaagctccagcgagg 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  aaaataggcaccatgtttaaccaaaggaagagataaattcaaagtgaagctccagcgagg 656

                                                                        
Query: 526  tccctgctgaagcagctcccgaagccgcctgtgagcccctgggcgctcttttcctaatct 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655  tccctgctgaagcagctcccgaagccgcctgtgagcccctgggcgctcttttcctaatct 596

                                                                        
Query: 586  cagttgaaggtacttcattcgcaagcttagtacctcgtttgaatcgtttgaatcacagca 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  cagttgaaggtacttcattcgcaagcttagtacctcgtttgaatcgtttgaatcacagca 536

                                     
Query: 646  gcttccaacaccgatcttgaaagaa 670
            |||||||||||||||||||||||||
Sbjct: 535  gcttccaacaccgatcttgaaagaa 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information