BAC Information

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BAC

Clone NameMSMg01-299K13
Chromosome8 (Build37)
Map Location 93,242,286 - 93,405,679
singlet/doubletdoublet
Overlap geneLOC100041133, Chd9
Upstream geneTox3
Downstream geneLOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299K13.T7 (MSMg01no299_k13.b1)MSMg01-299K13.TJ (MSMg01no299_k13.g1)
ACCAG426370AG426371
length746789
length of high quality
(start - end)		240 (71 - 310)389 (77 - 465)
definitionCHROMAT_FILE: MSMg01no299_k13.b1 PHD_FILE: MSMg01no299_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:38 2005CHROMAT_FILE: MSMg01no299_k13.g1 PHD_FILE: MSMg01no299_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,242,286 - 93,242,525)(93,405,291 - 93,405,679)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAAAGATTCCAAAGGCCACCATCACCATCACACCCATCCCCCTCC
CCTGCTTCCAGTCTCCATTCCCATTAAACAGCATACACTTTGCTTAGCAA
ATATCTTCATGTGGCCAGATCTGACATCCCAGCACAACTGTTAACAGAGC
TGGCATCTGAGTCCGAGGGACATCGTTTCATATATCGTCTCAGCCATTTA
TCAGCTCTCTGACCTTGCTCAAATTACTTAAGTTCTACACATCTGTTACT
TTGTCTGTAAAATAGTGACAAGAAAATCTAATTCACAGCGCTGCTGCAAA
TGATAAAATTAAATGGCTTGCTAAAAAGGCTCAGTGTAGAAACTGCTAAA
AAAAAAAATGATCTCGCATCAAGTATAAAGTGAGCCTATAAAGACCAGGT
CACTGCCAGACGATGCCATGACTTGAAGTCTTCAAACCAAACACAGAACC
AGCCCTCTAGACACTCACTATTGGGGGAATGAATTAATGTACAAATACTG
TGAGTCTAACTTAATTATCATCTATCTGCCTTAGATACTAGGCATCAGTG
TATCAAATGATAATTTTTGACCCCAATTATTGAGCTAAGTTATGGTACGA
TCTGCCTTACATACTATGGATAAGTATCAAAATACAAAATTCTGACACCA
CTTATTGAACTAAGGTACAAATTACCCACATGAACCACCCCTGCTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCAGGCAACAC
AGAGAGAACCTTTTAAAAGACAAAACAAAAATTGAATAACAATGGAAACA
ATAGCAATTGTTATGAACATCATCAGAGACAGGGGACTCAAAAATGGGAA
CCCACAGGTGAACAGGGTGGTTTTGGTCCCTTCCAATCACTAAACGTAAG
AAATAGGCCAAAAATCACCTGCTACTTATCCTACATGCAGACAAACTAGG
ACTTAATAAATTATATGAACTGCTAGGGAGGCAGCTACTGTGGTTCTACA
TTTGAATGGCATGTGGGAGAGATTGGACAAAAAAGATATAAAAGCTGACA
AGAGTGGTGGTTTGAATGCCTGGCCGGGGGAGGGGCACCATTAGGAGGTG
TGGCCTTTTTAGAGTGGGTGTGACCTTGTTGGAGTGGGCGTGACCTTGTT
GGAGGAGGTGTGGCTCTGTTGTAGGAGTTATGTCACGTTCCCGTTTGCTT
TTTTCCTTTCCTTTTCCATTCTTCTACATTCTTCCCCCTTTCTCCCTTTT
TCCATCTTTCCTTTTCCCTTCTTTTTCTTTCCTTTCCCCCCTATTTCCTT
CCTTTCTATCCCCTCTTCCTTTTTTGCCTCTTCCACCTTATTTTCTTTTT
CCCTCCTTTATCCCCTTCCATACTTCCCCCCACTTCTATTATTCTCCCTA
TCCCTTCCTCTTTCCTCTCCCCCATTACATCTCTTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_k13.b1 MSMg01no299_k13.b1 CHROMAT_FILE:
MSMg01no299_k13.b1 PHD_FILE: MSMg01no299_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:38 2005
         (240 letters)



>mm_chr8_93242086_93242725
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaccatcaccatcacacccatccccctcccctgcttccagtctccattcccattaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaccatcaccatcacacccatccccctcccctgcttccagtctccattcccattaaaca 260

                                                                       
Query: 61  gcatacactttgcttagcaaatatcttcatgtggccagatctgacatcccagcacaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatacactttgcttagcaaatatcttcatgtggccagatctgacatcccagcacaactg 320

                                                                       
Query: 121 ttaacagagctggcatctgagtccgagggacatcgtttcatatatcgtctcagccattta 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ttaacagagctggcatctgagtccgagggacatcgtttcaaatatcgtctcagccattta 380

                                                                       
Query: 181 tcagctctctgaccttgctcaaattacttaagttctacacatctgttactttgtctgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagctctctgaccttgctcaaattacttaagttctacacatctgttactttgtctgtaa 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no299_k13.g1 MSMg01no299_k13.g1 CHROMAT_FILE:
MSMg01no299_k13.g1 PHD_FILE: MSMg01no299_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:39 2005
         (389 letters)



>mm_chr8_93405153_93405941
          Length = 789

 Score =  745 bits (385), Expect = 0.0
 Identities = 388/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggcaggcaacacagagagaaccttttaaaagacaaaacaaaaattgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 caggacagccagggcaggcaacacagagagaaccttttaaaagacaaaacaaaaattgaa 468

                                                                       
Query: 61  taacaatggaaacaatagcaattgttatgaacatcatcagagacaggggactcaaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 taacaatggaaacaatagcaattgttatgaacatcatcagagacaggggactcaaaaatg 408

                                                                       
Query: 121 ggaacccacaggtgaacagggtggttttggtcccttccaatcactaaacgtaagaaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggaacccacaggtgaacagggtggttttggtcccttccaatcactaaacgtaagaaatag 348

                                                                       
Query: 181 gccaaaaatcacctgctacttatcctacatgcagacaaactaggacttaataaattatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gccaaaaatcacctgctacttatcctacatgcagacaaactaggacttaataaattatat 288

                                                                       
Query: 241 gaactgctagggaggcagctactgtggttctacatttgaatggcatgtgggagagattgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaactgctagggaggcagctactgtggttctacatttgaatggcatgtgggagagattgg 228

                                                                       
Query: 301 acaaaaaagatataaaagctgacaagagtggtggtttgaatgcctggccgggggaggggc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 227 acaaaaaagatataaaagctgacaagagtggtggtttgaatgcttggccgggggaggggc 168

                                        
Query: 361 accattaggaggtgtggcctttttagagt 389
           |||||||||||||||||||||||||||||
Sbjct: 167 accattaggaggtgtggcctttttagagt 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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