Query= MSMg01no300_b24.b1 MSMg01no300_b24.b1 CHROMAT_FILE:
MSMg01no300_b24.b1 PHD_FILE: MSMg01no300_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:13 2005
(700 letters)
>mm_chr8_116723433_116724532
Length = 1100
Score = 1309 bits (677), Expect = 0.0
Identities = 692/697 (99%)
Strand = Plus / Plus
Query: 4 ggaattctcctcagatttactttctaatggaccctgtctgaggagtcaaggttttatgcc 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctcagatctagtttctaatggaccctgtctgaggagtcaaggttttatgcc 263
Query: 64 ttctgaacctggattttcccatacctattcagttaccattattcacaatgatctatatca 123
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctgaacctggatttttgcatacctattcagttaccattattcacaatgatctatatca 323
Query: 124 aagtgctttggggaaacacatctctacgcagcatttggaaggagcagacagcattattgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagtgctttggggaaacacatctctacgcagcatttggaaggagcagacagcattattgt 383
Query: 184 gtgataattcatagaagaaatcacacagcctcacactaggggaaaaccttctataatatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgataattcatagaagaaatcacacagcctcacactaggggaaaaccttctataatatg 443
Query: 244 cagaaagggataaaagaaatcactgagaaatcatcttgtaagcatgaatgaggtttcaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagaaagggataaaagaaatcactgagaaatcatcttgtaagcatgaatgaggtttcaaa 503
Query: 304 gccataaactgcttcatttaaatttcctcacttggtcctgtgtggtatattctcctccac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccataaactgcttcatttaaatttcctcacttggtcctgtgtggtatattctcctccac 563
Query: 364 acttggccaaccatgtttaccaagcgatacaaaacaatcgataaaaatcatctctccgta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acttggccaaccatgtttaccaagcgatacaaaacaatcgataaaaatcatctctccgta 623
Query: 424 gacaatagctgcttgtgaataaaagggaaagacagaacaggtaaaatggtcccaatttta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gacaatagctgcttgtgaataaaagggaaagacagaacaggtaaaatggtcccaatttta 683
Query: 484 atcgttcgtgatctggcaaatacagaactaaactgttcttcttaggaatagtacctccag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atcgttcgtgatctggcaaatacagaactaaactgttcttcttaggaatagtacctccag 743
Query: 544 gttatacaaagaggatagggtttctttattaacttataccactaaacctcaactgaacac 603
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 744 gttatacaaagaggatagggtttccttattaacttataccactaaacctcaactgaacac 803
Query: 604 cacagagataaaaacataatgcataaatgcatatttgaggctgtagagaaagcttagtga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cacagagataaaaacataatgcataaatgcatatttgaggctgtagagaaagcttagtga 863
Query: 664 ctaaaagcatttgctatttcagggatcagagttcagg 700
|||||||||||||||||||||||||||||||||||||
Sbjct: 864 ctaaaagcatttgctatttcagggatcagagttcagg 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_b24.g1 MSMg01no300_b24.g1 CHROMAT_FILE:
MSMg01no300_b24.g1 PHD_FILE: MSMg01no300_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:13 2005
(290 letters)
>mm_chr8_116893705_116894393
Length = 689
Score = 453 bits (234), Expect = e-132
Identities = 276/290 (95%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 1 aagaggagtaccaggaagcatcctggaggtaatgggcaccaatctgttggccccatgtat 60
||||||| ||||| |||| |||||| ||||| || ||||||||||||||| ||||||||
Sbjct: 489 aagaggaatacca-gaagaatcctgaaggtagtgagcaccaatctgttgggtccatgtat 431
Query: 61 gtgaattaagattagctagaaagcctttgcattggtgcctagacataagagttgtaaatg 120
||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 430 gtgcattaagattagctaggaagcctttgcattggtgcctagacataacagttgtaaatg 371
Query: 121 tttgggtttctcctatccattttctgtctgtccccactcagcaattttcctgtctttctc 180
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttggttttttcctatccattttctgtctgtccccactcagcaattttcctgtctttctc 311
Query: 181 aaacactttaatttttccatctccactttcattagtccgtggctaatccctcattctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaacactttaatttttccatctccactttcattagtccgtggctaatccctcattctggc 251
Query: 241 atcatgggagaggttgcaaactgcctgtatttcctcggacaccagctctg 290
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 250 atcatgggagagcttgcaaactgcctgtatttcctcggacaccagctctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space: 191080
Effective search space used: 191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
