BAC Information

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BAC

Clone NameMSMg01-300D01
Chromosome8 (Build37)
Map Location 116,474,462 - 116,474,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
Downstream geneNudt7, AI427515, Clec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300D01.T7 (MSMg01no300_d01.b1)MSMg01-300D01.TJ (MSMg01no300_d01.g1)
ACCAG426746AG426747
length763736
length of high quality
(start - end)
293 (74 - 366)45 (77 - 121)
definitionCHROMAT_FILE: MSMg01no300_d01.b1 PHD_FILE: MSMg01no300_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:17 2005CHROMAT_FILE: MSMg01no300_d01.g1 PHD_FILE: MSMg01no300_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAATCCG
CGGAATTCTGTCCTTGTTACAATTCCTAGACCACTTGCGGAGCCACCTTG
CAAGACCATAAAATTAAAAGATTGCCCCACAGTTCTACAGTTCCTTGATA
TTTGGCCCCAACCTTCACAGCTCCTTGTACTCCAGTAAAAAGCCATCCAT
TGTATCCATCAGAGGAAGCCACTCCTTACAAGGATCTGGAATCCTTTCAC
ACACACCCCTCTCAGGCCCAGTCTGCTCTCTGGAGTCACACCCCACACAT
CTGCTGTCTCCCAAACTGTCAGCAGTGATCTGTTTGTGTCTCCTCCCTCT
GGGAGAGCTCCAGGTTCTCCACGTCAATGCCTTTCACACTTTCACACCGT
CGGTGGCGCATCAATCACATCCTACCAAAGGAAGCTCATCCCATTTGTTG
TGTACGTATCACTACTCGTTCTTCCTCTTGACCCGCGGTTTACATGTTGT
GCTTTTTCTGACTGACAGGAACATGTGCTTTCACGCTTTCCATTGTACTC
TTTAACCTGATCCCTACACCCTTACCATATTACCTCTGGTCCTGCCTCGT
TTTATTTCTCACCATTCATTTTACAGCTTTTTCCCACCCCTCTTTTCACT
TCCTTCCCAACTTTTTTTTCTCACCCCGCCTATTTCTTCCCCCTTACTTT
TGCGTTTTTTCCCCGCCTTTTCTTCCCCCTTCCCATTCACCCTATATTTT
TCCCCTCATCCCC
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTCTTCTATTATTATTGCATT
TTTGTCCAAAGGGCTGAGACCTTACTCGCTGCAAGTCCTAGCTCCCCTTT
GTGGCATCTCTGGATCCTGTTTTCAAAGTCCATTAGGGGTGCATGTGATT
GACTAAACCTGAGCCGTGAGTTCATGCCATGGCTGTAAGGCATGCTGGGA
AAGCAAATATCTGACTCCCTTAGCTTCTTCAGTAGAGCACAGGTAGGATT
ATCTAGACGCATGATGAGTTGAGATTCCAAGTAGCTGACAATCTGGACAA
ATGTCTTCCATAATGAATATTAGTCCCCCCCCCCCCCCCCACAGATCTGT
AGAAAAGGATTTGTTTGTGCAGCTTGCAAGAATAAAAAAATAATATGGGG
CTGGAGAAGATGGTTCATAACGAAAAGTTGTTTAGCGTGATTACCTGACT
TGGATCTCTTGACTTTACGTTCTACACTGTTTGGTCTTGTTATCGCACGT
TCCCTTTTCCACTGTCGGTTACGTCTACCCTTTTTTATTCTCAGGCACCT
CTAACCCTTCTGCTTATTCTACCTGTTGATCCCCATGTCTGTTACCCTCT
ATCTCTTACTCCCCTTTACTTTCTTTCCCCCTTTTCCCCTTTTTCCCCTA
CCCCTTTCGCCTCCATTTTTTTGCACTCCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_d01.b1 MSMg01no300_d01.b1 CHROMAT_FILE:
MSMg01no300_d01.b1 PHD_FILE: MSMg01no300_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:17 2005
         (293 letters)



>mm_chr8_116474262_116474953
          Length = 692

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%), Gaps = 1/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctagaccacttgcggagccaccttgcaagaccataaaattaaaagattgccccacagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tcctagaccacttgcggagccaccttgcaagaccataaaattaaaagattgcccca-agt 259

                                                                       
Query: 61  tctacagttccttgatatttggccccaaccttcacagctccttgtactccagtaaaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctacagttccttgatatttggccccaaccttcacagctccttgtactccagtaaaaagc 319

                                                                       
Query: 121 catccattgtatccatcagaggaagccactccttacaaggatctggaatcctttcacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catccattgtatccatcagaggaagccactccttacaaggatctggaatcctttcacaca 379

                                                                       
Query: 181 cacccctctcaggcccagtctgctctctggagtcacaccccacacatctgctgtctccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cacccctctcaggcccagtctgctctctggagtcacaccccacacatctgctgtctccca 439

                                                                
Query: 241 aactgtcagcagtgatctgtttgtgtctcctccctctgggagagctccaggtt 293
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 aactgtcagcagtgagctgtttgtgtctcctccctctgggagagctccaggtt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)