XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACAGAATATGTGGGGAACAGGATCAGGAGGCTGCTCATCTATGGTACCAC
TAGGGATGAGTAGTACCTCTTAGATCTGGGAGAAGAGAGGAGAAGGTCTG
CTGGTAGTTACCTGATTTTCCATCAGGGTGGCTTGTGTGTTTTCCAACTT
TTATTTTTATTACCTCAAGAATTATTTGTTCAGTATTGCTTACATACCAG
GTACTCCTTTAGGACCATATAAAAGAATGAAATTTAAGTTTGAGATGAAA
GTTATGAGAAAAAGAGTGTGGAAAGACATGCTGTAAAAATGTATTTATTC
CTTTTCTTGGTTACCCTACAACCCACTGGTGTGTGTGTGTGTGTGNNNNN
NNNCNCCCCCCAAAAAAAAAAAAAAAAAACTTTCGGGGGCGGGGGGTCTC
CCTCCCCCTCTTTTCCTTTTCTTTCCCACCACCTATCTTTCTCAAACTAT
TCGCCTTTATTCATTTCTTTTCCCATTCTCGTTTTTTTATATTATATTTC
CTCGTTATCCTTTTCCTCCCCTCTTTTCCCTCTCCTTTTTCTCATTTCTC
TTCCTTCGCTTTTCTACTTTTTTTCTTTTTTCTCCTCCCTTCCTTTCTTT
TATTTCCCTTTCCTCCCTTCCTTTTTTCCCCTCCACTTTCATTCCTTTTC
CTTTCCTTTTTCCCGTCTTCATTTCGCTTCCTGCCCTCCTTCTACACTTC
CTTTTCCTCCTCTCATATTCTCTCCTCCCCCCTCTTTTTCTTCTTTTG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAAAATATGAAAGGGATAGGCCTTGAAAT
ATACTTGGAATACTCTGTTAACCTGGTCACTGTAGTAGATTAATATTGGG
CAGAAGGTCATTCAGCTGTGAAATGACAATTATGATTAACACCTTCTACA
CCTTTATTAGTGCTAAATTAGACACAGTTATTCTTGGGCACAACACTGAA
TATATAGCCTTCTGTGTCCTCTTCTCTATTATATTTATTGTTTGTATAAT
TTGAGCCAAATATTTCAGTGCATCAGCATTTCAAGAAATGTGTCAAATAT
AATGTTTTTTCTAAAAGGCGCCACCTTATTTCTGTATTCATGAAAGGTCA
GGAATATAATTTGACGACTATATCAAAGAACAAAGCTACAAAAGTGATAT
CTAAGTTGGTTCTTGATTCAGCCTATTGTTGAGCTTTTGTTTTTTGCTAT
GTATTGTAATGTTAATTCTGTCCCCCAAGGCCTGGTTTCTCCTAGGAATG
AGAGAATCTGCACATAAAATGTAAATTTCCTCCTTAATTCAAAACTATTA
TTTAAATAAGAATGTCTATAACCTGTAGCTGGGCAGAATTAATATTGGCC
AGACATGGGAATCCTGGGCTTGGGAGCCAGAGGAAAACCAGAGTAGAGAG
AATGGAGAGAGGAACAAGTGGAGAGAGGAACAAGTCAACATGGGGTACG

Query= MSMg01no300_e16.b1 MSMg01no300_e16.b1 CHROMAT_FILE:
MSMg01no300_e16.b1 PHD_FILE: MSMg01no300_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:24 2005
         (317 letters)



>mm_chr8_53618381_53619097
          Length = 717

 Score =  528 bits (273), Expect = e-154
 Identities = 303/313 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagaatatgtggggaacaggatcaggaggctgctcatctatggtaccactagg 64
           |||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 517 gaatccacagaagatgtgggcaacaggatcaggaggctgctcatctatggtagcactagg 458

                                                                       
Query: 65  gatgagtagtacctcttagatctgggagaagagaggagaaggtctgctggtagttacctg 124
           |||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 457 gatgagtagtaggtcttaggtctgggagaagggaggagaaggtctgctggtagttacctg 398

                                                                       
Query: 125 attttccatcagggtggcttgtgtgttttccaacttttatttttattacctcaagaatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 attttccatcagggtggcttgtgtgttttccaacttttatttttattacctcaagaatta 338

                                                                       
Query: 185 tttgttcagtattgcttacataccaggtactcctttaggaccatataaaagaatgaaatt 244
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 337 tttgttcagtatggcttacataccaggtactcctctaggaccatataaaagaatgaaatt 278

                                                                       
Query: 245 taagtttgagatgaaagttatgagaaaaagagtgtggaaagacatgctgtaaaaatgtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taagtttgagatgaaagttatgagaaaaagagtgtggaaagacatgctgtaaaaatgtat 218

                        
Query: 305 ttattccttttct 317
           |||||||||||||
Sbjct: 217 ttattccttttct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no300_e16.g1 MSMg01no300_e16.g1 CHROMAT_FILE:
MSMg01no300_e16.g1 PHD_FILE: MSMg01no300_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:24 2005
         (292 letters)



>mm_chr8_53469598_53470289
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaatatgaaagggataggccttgaaatatacttggaatactctgttaacctggtcact 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaatatgaaagggttaggccttgaaatatacttggaatactctgttaacctggtcact 260

                                                                       
Query: 61  gtagtagattaatattgggcagaaggtcattcagctgtgaaatgacaattatgattaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtagattaatattgggcagaaggtcattcagctgtgaaatgacaattatgattaaca 320

                                                                       
Query: 121 ccttctacacctttattagtgctaaattagacacagttattcttgggcacaacactgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttctacacctttattagtgctaaattagacacagttattcttgggcacaacactgaat 380

                                                                       
Query: 181 atatagccttctgtgtcctcttctctattatatttattgtttgtataatttgagccaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatagccttctgtgtcctcttctctattatatttattgtttgtataatttgagccaaat 440

                                                           
Query: 241 atttcagtgcatcagcatttcaagaaatgtgtcaaatataatgttttt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcagtgcatcagcatttcaagaaatgtgtcaaatataatgttttt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)