BAC Information

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BAC

Clone NameMSMg01-301E10
Chromosome8 (Build37)
Map Location 24,820,119 - 24,820,437
singlet/doubletsinglet
Overlap geneZmat4
Upstream genePlat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301E10.T7 (MSMg01no301_e10.b1)MSMg01-301E10.TJ (MSMg01no301_e10.g1)
ACCAG427522AG427523
length789769
length of high quality
(start - end)
317 (40 - 356)292 (68 - 359)
definitionCHROMAT_FILE: MSMg01no301_e10.b1 PHD_FILE: MSMg01no301_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:38 2005CHROMAT_FILE: MSMg01no301_e10.g1 PHD_FILE: MSMg01no301_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TCCGAATCTCGCAAAAAAATCACTTAGCTTAATCACGCCGCCCTGATTTA
ATTTTAACTTTTCATAAAGCCTGAGATGAGTGGGGTGTGTTTGGTGGCTT
ACTGATGAGACTGGGCTCACATCTGGCTGTTTCCTCTTTTTTTTTTTTTT
TTTTAACAAGTTCCAAAATGAAAGGGGTTAGGAAAGGAAGTTGATGAATA
ATTAAAAGGAGGCAACACCTGCAAACTGTGCATCCGAAATGCAAAGGGGG
CCCTTTTGCTTCTCTCTGGTGTTCAGACAGCCAGCGACCACCTAGGGGAT
CCACAGACAGGGCTTCTTTTAAGGTATTTGAGGTTGTGGTTGTGGCAATT
CCACAGGATCGCCCCCCTCCCCTATGATTCCTTGTATTCTCGTCTTTCCT
GTGTTTGTTTATCTACATGTGCCCTCTACTATATTCTCTTGGTTTCTTTT
CCCTCTGGCTTCTTGATTTGTTATCTACTTTATGCCTTGTCTTATCCAGC
ATGCACATTGTACCCCATTTCATTCTCCATATTCCTTTTTTCCTTCTCTC
TTCGTTAGTACATTCCCTCATCATCTACTTCTTGTCCTTCTATTTCTTTT
TTCGCTTTTTCGCCTTCCCCCTCTCTCTTTTTCCCTTTCCTACCCTTTTG
CCTACATTTTTTCCTTTTCTTCTATTAAACTTCCTTTTTGTTTCCCCGTC
TTTTTATTTCTTTTCCTTTTCTTCGCTTTCTTATTCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAGGTTAATATGACGAGGGAGCAACCATGTAGT
AGGCGATGTTCTAGTCTGTGGCAAACTAGACTTCAAACCAAAATTAATCA
GAAGCTATAAAAACAAACAAAAAACAAAACAAACAAACAAACAAACAAAC
AAAAAAACCTGTTTCACTCTGACCAAGGGAACAATTAACCAACCAAAAGG
ACACCAGAATCTTAAACATCAGTGCAGCAAATGCAGCAGGCACACCCAAT
TTCATGACAAGCATACCACTAGACTTTAAACCACAGATTAAACCCAATAC
ACCAACCGTATATTATTTTACCCCACCCCCCCTTCCAACGGAAATTATCC
AGACCAAATGTAAATTAAAAACACTGAGATAAAATGACAGTCTAGAGAAA
TGTAGGTATAGTAGTGCAGACATTAATGAAATAGAAACAAACAAGATACA
AATAAACAAAGGGCCATTTTTTGTTTGTTTGTTTGATTGTTTGTTTGTTG
TTTTATAAGATGGACAAGATCCACAGACCTATAATGGTGCCTACCTTTAT
CAAGATAACAGGTATCTACAGGGCAGTTTACCCAAATAGCACAGGACACA
CATTCTTTTCAGAAGTCCGTTGAAGTGTCTTGAAAATAGATCGTATACTG
GGACACTAGTTAAATCTCAAGGGGAAATTGCTACTTGCAGTCCATATGGG
CATAAGTGCAACAAGGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_e10.b1 MSMg01no301_e10.b1 CHROMAT_FILE:
MSMg01no301_e10.b1 PHD_FILE: MSMg01no301_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:38 2005
         (317 letters)



>mm_chr8_24819916_24820637
          Length = 722

 Score =  572 bits (296), Expect = e-168
 Identities = 312/320 (97%), Gaps = 7/320 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatccgaatctc-gcaaaaaaatcacttagcttaatcacgccgccctgatttaa 62
           |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggaattcatccgaa-cccggcaaaaaaatcacttagcttaatcacgccgccctgatttaa 464

                                                                       
Query: 63  ttttaacttttcataaagcctgagatgagtggggtgtgtttggtggcttactgatgagac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttttaacttttcataaagcctgagatgagtggggtgtgtttggtggcttactgatgagac 404

                                                                       
Query: 123 tgggctcacatctggctgtttcctc-----ttttttttttttttttttaacaagttccaa 177
           |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||
Sbjct: 403 tgggctcacatctggctgtttcctctttttttttttttttttttttttaacaagttccaa 344

                                                                       
Query: 178 aatgaaaggggttaggaaaggaagttgatgaataattaaaaggaggcaacacctgcaaac 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aatgaaaggggttaggaaaggaagttgatgaataattaaaaggaggcaacacctgcaaac 284

                                                                       
Query: 238 tgtgcatccgaaatgcaaagggggcccttttgcttctctctggtgttcagacagccagcg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgtgcatccgaaatgcaaagggggcccttttgcttctctctggtgttcagacagccagcg 224

                               
Query: 298 accacctaggggatccacag 317
           ||||||||||||||||||||
Sbjct: 223 accacctaggggatccacag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 722
Length adjustment: 9
Effective length of query: 308
Effective length of database: 713
Effective search space:   219604
Effective search space used:   219604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)