BAC Information

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BAC

Clone NameMSMg01-301F17
Chromosome8 (Build37)
Map Location 102,511,143 - 102,511,456
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301F17.T7 (MSMg01no301_f17.b1)MSMg01-301F17.TJ (MSMg01no301_f17.g1)
ACCAG427582AG427583
length759766
length of high quality
(start - end)		318 (40 - 357)641 (68 - 708)
definitionCHROMAT_FILE: MSMg01no301_f17.b1 PHD_FILE: MSMg01no301_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:44 2005CHROMAT_FILE: MSMg01no301_f17.g1 PHD_FILE: MSMg01no301_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTCAAAAATGTCTGAGAGGAGACTGTTTTTTGGGGTTTTATTTCCACGAT
TCCCAATAATGCTTTGAACTTTAACCAAAACTTTTCCAACGTAAAGAATA
AATTATGAAAAAGGTTATAAATCTCATTAAAATCTAATATTCAGCAAAGC
TGCCTGGTGTGTACACTATGGAAAATTGGACGTTACTGTAACTGGAGCCC
TATGTATAATATTGGAAGTTAATTACAGAGGGCAGTTTTTTTTTCCACAT
AATGATAGCTTATACAGGCTCAGTCTTCATGATTTCATCAGAATGTAACT
GCTCTTAATATTTAGTTTTAACACCCATTCACCTCTTCAGGTTCACAAGA
CTAAACACTTCCTGAGTAAATAGAAATTTACATGTATTCTGTAAGACTAA
AATTAAATGATGAATAATGCCTTTATACACATATACACATGCTTAAACAC
ACACACACACGCACACACAGAGAGAGAGAGAAGCTGTTCGTATGAGGAAA
TAGTTCGTACAAAATAGATTAAGGTTTTTGTCAGTTATAAAATTCCCTGA
CATCTGAGTTAGCTGTTGATGATAAAGATTGGAAAAATCACAGTTATCTG
GAGGTCTCAGGTGGCTGCTTGGGGTATTTGTAATTGTTTGTGTTCCAAAG
GATGCTCAGCTTGTCTGTTTTCAATTTGAATTAAATACAAACATTCCATT
GTTTTGCGG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCAC
CTGAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCCTATATTCCATCTCACACCAGTCAGAATGGCTAAGATAAAAAATTC
AGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGCTGGTGGGATTGCAAGAATGTACAACCACTCTGGAAATTTTTCTGG
TGGTTCCTCAGAAAATTGGGCATAGTACTACTGGAGGATCCTCTAATACC
TCTCCTGGGCATATATCCAGAAAATGTTCCAACTGGTAAGAAAGACACAT
GCTCCACTATGTTAATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGTCCCTCAACAGAAGATGGATACAGATAATGCGGTACATT
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGGCAAATGGATTGACCTGGAGGGCATCATCCTGAGTGAGGTAACCC
AATCACAAAAGAACTGACTTGATATGTACTCACTGATAAGTTGATATTAA
AAACTTAGAATACCCAAATACAAGATACAAAGCACATGAAATTCAAGAAG
AAAGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAAATGTGAACCA
AAAACCCATGGAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_f17.b1 MSMg01no301_f17.b1 CHROMAT_FILE:
MSMg01no301_f17.b1 PHD_FILE: MSMg01no301_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:44 2005
         (318 letters)



>mm_chr8_102510939_102511656
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcaaaaatgtctgagaggagactgttttttggggttttatttccacgattcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 518 gaattcactcaaaaatgtctgagaggagactgttttttggggttttatttccatgattcc 459

                                                                       
Query: 65  caataatgctttgaactttaaccaaaacttttccaacgtaaagaataaattatgaaaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caataatgctttgaactttaaccaaaacttttccaacgtaaagaataaattatgaaaaag 399

                                                                       
Query: 125 gttataaatctcattaaaatctaatattcagcaaagctgcctggtgtgtacactatggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gttataaatctcattaaaatctaatattcagcaaagctgcctggtgtgtacactatggaa 339

                                                                       
Query: 185 aattggacgttactgtaactggagccctatgtataatattggaagttaattacagagggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aattggacgttactgtaactggagccctatgtataatattggaagttaattacagagggc 279

                                                                       
Query: 245 agtttttttttccacataatgatagcttatacaggctcagtcttcatgatttcatcagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agtttttttttccacataatgatagcttatacaggctcagtcttcatgatttcatcagaa 219

                         
Query: 305 tgtaactgctctta 318
           ||||||||||||||
Sbjct: 218 tgtaactgctctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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