BAC Information

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BAC

Clone NameMSMg01-301G05
Chromosome8 (Build37)
Map Location 27,936,485 - 28,094,349
singlet/doubletdoublet
Overlap geneZfp703
Upstream geneAsh2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
Downstream geneErlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301G05.T7 (MSMg01no301_g05.b1)MSMg01-301G05.TJ (MSMg01no301_g05.g1)
ACCAG427606AG427607
length816725
length of high quality
(start - end)
153 (123 - 275)401 (72 - 472)
definitionCHROMAT_FILE: MSMg01no301_g05.b1 PHD_FILE: MSMg01no301_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:47 2005CHROMAT_FILE: MSMg01no301_g05.g1 PHD_FILE: MSMg01no301_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,094,197 - 28,094,349)(27,936,485 - 27,936,885)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAAAAGGCGCGGAANC
AAAGAATATTCCCTATAGATGTGGGGGATAAAACACACCCAACTCTGTTT
GAGTCAAGCCTATTTCTCCCCGCAAGCCTTCCCCCCTCTTTCTCCTTCTC
TTCTCTCTGCTGTCTTCAGGACCACAAAAATAACCCAGCAACGTGTGAAA
ATAGAACCCAGAGCCAAGAACAGCCAGTGTCAGTGTCTCATGTCCCGGCT
TTGTGGTTTCTACCCTGCTGTCCTGGTAACACTAGGTCCCATTCTGGAGC
CTGCGGGAGATCTATTTTTTTTTTTGCGAGGACCNATCCCCAAACCACCA
ACACTTTTTTGGTGTTTTCAAAAACAAAAAGCCCCAAAANAGGAAAAAAA
AAAAGGNGGGGGGGGGGGCGCCCCAAAACCNCCAAACNCCAAAGCCGGGG
GGGGGGGGGGGCGCCCCCACCCCCCCCCCCCACCACCCCCAACACCCCCA
AAAATACCCAACACCCCCAACACCCCCCCAGCCCCCAAAACCACCACCNA
AACCACCACACTACCCCCCCCCCAACCGCACCCAAACGCCGAATTTTCCA
CCCCTTTTCTTTCCCCCTATCTATACTTCCCAATTCCTGTTCTCTCTCTC
TTTCCATTTCCTCGACCTTCCACCCCCCTTCTATTTTTACTCCCGCCCCC
TTTTCCTTTTTCTCAACTTCACTATTCTCCTCCTTTATTCTCATCCATAT
TTCCACACCCTTTTTCCTTCACTAGGCGTACCACTCTTTTTTCTGCCGTT
TCTTTTTCTCTTTTTA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATAGCCTTGTAATCATGAGCAATATATGT
ATTTTCCTTATAAATTATCACTCTGTGATAGTCTGCTAACGCTGCACAAA
AATAGACTAAGAGACAGGGACACAGATACTATGTGGCAGCCACACAAATG
GTGGTATAACTCCAGACAGCTCCATTATGAAGAGGTATAAATGGGGCCAC
AATCAAGAAGGGGCTTCGTGGAGGCATCGCATTTGAAGCCAGACCTGAGA
ACTGAGTCCATAAAGCAGCTAGCAGGAGAGTGAAGTCGTTCAGATAATCT
CGGAGCTAAACAGTGGTGCAGCTTCCCCCAAGGGCTGTAAGAAGGATGTG
CGGCAACAAATGGTGAGCAATGGGGCAGATGCACGGTGGTCAATACCGCC
TCTAAGTCATCCCTAATGCAAGAAGGAACAAGCAAAGAATCAGCAAGAAA
GATGAGAGCAGGTATGTGGCTTTAAAAGATGATATGAGCAGAAGGGATAC
AGGAGTCAATGCATCTTACGTTATTGCAGTCCGGGTAGGGTCAAGCGGGT
AGTGACACGCTCAGACGTGATGTGTGAGCATGAAGGTCTGAGCACATATT
GACTCCACTTGAGCTACCACCTCCAGCATGAGCTGAAAGAGCAATGTTAA
AACAATCTCGAGCGCCGGCGGTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_g05.b1 MSMg01no301_g05.b1 CHROMAT_FILE:
MSMg01no301_g05.b1 PHD_FILE: MSMg01no301_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:47 2005
         (153 letters)



>mm_chr8_28093997_28094549
          Length = 553

 Score =  281 bits (145), Expect = 2e-80
 Identities = 151/153 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagccttcccccctctttctccttctcttctctctgctgtcttcaggaccacaaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 caagccttcccccctctttctccttctcttctctctgctgtcttcaggaccacaaaaata 294

                                                                       
Query: 61  acccagcaacgtgtgaaaatagaacccagagccaagaacagccagtgtcagtgtctcatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 293 acccagcaacgtgtgaaaatagaacccagagccaagaacagccagtgtcagtatctcagg 234

                                            
Query: 121 tcccggctttgtggtttctaccctgctgtcctg 153
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tcccggctttgtggtttctaccctgctgtcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no301_g05.g1 MSMg01no301_g05.g1 CHROMAT_FILE:
MSMg01no301_g05.g1 PHD_FILE: MSMg01no301_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:47 2005
         (401 letters)



>mm_chr8_27936285_27937085
          Length = 801

 Score =  721 bits (373), Expect = 0.0
 Identities = 394/401 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagccttgtaatcatgagcaatatatgtattttccttataaattatcactctgtgatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagccttgtaatcatgagcaatatatgtattttccttataaattatcactctgtgatag 260

                                                                       
Query: 61  tctgctaacgctgcacaaaaatagactaagagacagggacacagatactatgtggcagcc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tctgctaacgctgcacaaaaatagactaagagacaggggcacagatactatgtggcagcc 320

                                                                       
Query: 121 acacaaatggtggtataactccagacagctccattatgaagaggtataaatggggccaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 acacaaatggtggtataactccagacagctccattatgaagaggtataaacggggccaca 380

                                                                       
Query: 181 atcaagaaggggcttcgtggaggcatcgcatttgaagccagacctgagaactgagtccat 240
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 381 atcaagaaggggcttcgtggaggtatcccatttgaagccagacctgagaactgagtccat 440

                                                                       
Query: 241 aaagcagctagcaggagagtgaagtcgttcagataatctcggagctaaacagtggtgcag 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagcagctagcagaagagtgaagtcgttcagataatctcggagctaaacagtggtgcag 500

                                                                       
Query: 301 cttcccccaagggctgtaagaaggatgtgcggcaacaaatggtgagcaatggggcagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcccccaagggctgtaagaaggatgtgcggcaacaaatggtgagcaatggggcagatg 560

                                                    
Query: 361 cacggtggtcaataccgcctctaagtcatccctaatgcaag 401
           ||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 561 cacgggggtcaatactgcctctaagtcatccctaatgcaag 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)