BAC Information

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BAC

Clone NameMSMg01-301K11
Chromosome8 (Build37)
Map Location 92,540,023 - 92,701,111
singlet/doubletdoublet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301K11.T7 (MSMg01no301_k11.b1)MSMg01-301K11.TJ (MSMg01no301_k11.g1)
ACCAG427787AG427788
length737744
length of high quality
(start - end)		318 (38 - 355)493 (68 - 560)
definitionCHROMAT_FILE: MSMg01no301_k11.b1 PHD_FILE: MSMg01no301_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:06 2005CHROMAT_FILE: MSMg01no301_k11.g1 PHD_FILE: MSMg01no301_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,700,800 - 92,701,111)(92,540,023 - 92,540,513)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
AGTTTGCCCTTCTAGCCGGCAATGCTGGAGATTACTCCTGGACTTGGTGT
GTGTTAGCATGGGCTCTCCCACCAAGCTCCATCGCTAGCCCTAGGAATGT
CTCTAAGCACTCCCATACGTGCGCTGAGCAGGCTGGGGATCTCTTACTCT
CCTCCTATCCCCAGGAGAGCAGCCGATGCACTTGAGATCCTGACTGATCA
TCTCTCCTCCATGCAGGATTTTAAGGAAACTTAGACGCATGAAAACCCAG
CAACAAAAGCAAGAAACAAAAGAGCTGTCATGAAGAATCACATGGACCCC
TGATTTTTTTCTTTCCCACCCCCCTACATAACTCCTCGAGCAATAATGTG
TTTGCAAGCTGTTAATTAGCAGCATAATTAATTTCTGTAGATTATAAATA
ACAGCACAAAGTGGCATTCCCAGGAGAGCCAATGAAAAATTACCCAGACC
ATTTTAGGAACCAAAAATACTCTGTAATGTAACAGATTTAAATGGCCTCC
AGCATAGGAGAGGGGTTGTTTTCCTTTGTTTCCTGTGGGCTTAAAAGGAG
CAAGCTTGTATCTAAAGTCAAAACTTTATATGGTGAGAAGCAGTTTCGTT
AATCGCCCTGCTCTCACTTATGCCTGGCATGTTGAAAAGGAAAGAATAAA
ATCTGTTTATCCGTGCTTCCAAACAATAGGGGAGGTT

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACATTCCCAACACACATGAGGCTAAGGTTGTCT
TACAAATACAGTAAGAACCAGTAGTTTCTCCATTCCCCTTAACTCGTGAA
ACACAAGAGTAGGTAGAGTCACCGCAAAAGAGAGTTAATGTCCTGGGAGA
GGAGAGGTCTGATCACAGAGAGCTGGTTTGATGGCTTTGCAGATTACTCT
TGGGATGCTCCTCACAGCATGCTTGAAAGTGGTTGCTAACTCTGTGTTTT
ACCTGAGCTTCCACACACTGCACCCCCCCTACTCCCGTTCTGAAGCAATT
CTCTTCATGTGTTTAAGGAGTGGGTGTGACTAGACGGTGGCCCTGAAATC
AGATGACACCCCAGCAGGTGCAAGAAAACAGATGTGGCTCATTTACAGTT
CCCCACCTGTAATTAAAGGCCTTTCATCCCTTCTTACTGCCAACCATGCA
TGACAAGCTCCTGCAGAGTCTTCACAGGATTTCAGCACCTGGACACTTCC
CCAGACCCTCTGAGGTAGGGCTCAAGCTCTGATAATTTTCTTAATGTTGC
TTCCCCTCCCCCATTACTGTAACATGAACAAAAATGTGTGGATCTCTTTA
TTACGAACAACACATTGGCACTAGCTGAATTACCTTATTTTTCTTGACCA
CCTTAGCTATCCCCGGGGCCTCCCCTTCTGAAGCTTTTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_k11.b1 MSMg01no301_k11.b1 CHROMAT_FILE:
MSMg01no301_k11.b1 PHD_FILE: MSMg01no301_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:06 2005
         (318 letters)



>mm_chr8_92700596_92701313
          Length = 718

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccagtttgcccttctagccggcaatgctggagattactcctggacttggtgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctccagtttgcccttctagccggcaatgctggagattactcctggacttggtgtg 457

                                                                       
Query: 65  tgttagcatgggctctcccaccaagctccatcgctagccctaggaatgtctctaagcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgttagcatgggctctcccaccaagctccatcgctagccctaggaatgtctctaagcact 397

                                                                       
Query: 125 cccatacgtgcgctgagcaggctggggatctcttactctcctcctatccccaggagagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cccatacgtgcgctgagcaggctggggatctcttactctcctcctatccccaggagagca 337

                                                                       
Query: 185 gccgatgcacttgagatcctgactgatcatctctcctccatgcaggattttaaggaaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gccgatgcacttgagatcctgactgatcatctctcctccatgcaggattttaaggaaact 277

                                                                       
Query: 245 tagacgcatgaaaacccagcaacaaaagcaagaaacaaaagagctgtcatgaagaatcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tagacgcatgaaaacccagcaacaaaagcaagaaacaaaagagctgtcatgaagaatcac 217

                       
Query: 305 atggacccctga 316
           ||||||||||||
Sbjct: 216 atggacccctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_k11.g1 MSMg01no301_k11.g1 CHROMAT_FILE:
MSMg01no301_k11.g1 PHD_FILE: MSMg01no301_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:06 2005
         (493 letters)



>mm_chr8_92539823_92540715
          Length = 893

 Score =  949 bits (491), Expect = 0.0
 Identities = 491/491 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattcccaacacacatgaggctaaggttgtcttacaaatacagtaagaaccagtagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattcccaacacacatgaggctaaggttgtcttacaaatacagtaagaaccagtagttt 260

                                                                       
Query: 61  ctccattccccttaactcgtgaaacacaagagtaggtagagtcaccgcaaaagagagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccattccccttaactcgtgaaacacaagagtaggtagagtcaccgcaaaagagagtta 320

                                                                       
Query: 121 atgtcctgggagaggagaggtctgatcacagagagctggtttgatggctttgcagattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtcctgggagaggagaggtctgatcacagagagctggtttgatggctttgcagattac 380

                                                                       
Query: 181 tcttgggatgctcctcacagcatgcttgaaagtggttgctaactctgtgttttacctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttgggatgctcctcacagcatgcttgaaagtggttgctaactctgtgttttacctgag 440

                                                                       
Query: 241 cttccacacactgcaccccccctactcccgttctgaagcaattctcttcatgtgtttaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttccacacactgcaccccccctactcccgttctgaagcaattctcttcatgtgtttaag 500

                                                                       
Query: 301 gagtgggtgtgactagacggtggccctgaaatcagatgacaccccagcaggtgcaagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtgggtgtgactagacggtggccctgaaatcagatgacaccccagcaggtgcaagaaa 560

                                                                       
Query: 361 acagatgtggctcatttacagttccccacctgtaattaaaggcctttcatcccttcttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagatgtggctcatttacagttccccacctgtaattaaaggcctttcatcccttcttac 620

                                                                       
Query: 421 tgccaaccatgcatgacaagctcctgcagagtcttcacaggatttcagcacctggacact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccaaccatgcatgacaagctcctgcagagtcttcacaggatttcagcacctggacact 680

                      
Query: 481 tccccagaccc 491
           |||||||||||
Sbjct: 681 tccccagaccc 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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