Query= MSMg01no301_k18.b1 MSMg01no301_k18.b1 CHROMAT_FILE:
MSMg01no301_k18.b1 PHD_FILE: MSMg01no301_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:07 2005
(651 letters)
>mm_chr8_37668811_37669861
Length = 1051
Score = 1226 bits (634), Expect = 0.0
Identities = 643/646 (99%), Gaps = 1/646 (0%)
Strand = Plus / Plus
Query: 5 gaattcagagaacacac-accctaaacacttgcttctgcatggatccccaggccccaaac 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagagaacacaataccctaaacacttgcttctgcatggatccccaggccccaaac 263
Query: 64 caagcttaattttcacagaaaaccctccagtctattaaaaaaaactcttagaattatata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagcttaattttcacagaaaaccctccagtctattaaaaaaaactcttagaattatata 323
Query: 124 tatatgtatattactatctatctataatactgtgttatatataaagatatattttatata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatatgtatattactatctatctataatactgtgttatatataaagatatattttatata 383
Query: 184 tttttaaaatatatattatacatcagtataaatatgtatgtatgtatgtatgtattcttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttttaaaatatatattatacatcagtataaatatgtatgtatgtatgtatgtattcttt 443
Query: 244 aaagttttacttcttccctggcattctgagtcctggggaggcagggaacagggtgctgac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagttttacttcttccctggcattctgagtcctggggaggcagggaacagggtgctgac 503
Query: 304 atacacatgggactttttcctgttataagggtgtggtccggagtttggacaatctgctgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atacacatgggactttttcctgttataagggtgtggtccggagtttggacaatctgctgg 563
Query: 364 aattcagacgcaccagatggtgtcctccgcccaaagagtttcttgcctattccacggtag 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aattcagaggcaccagatggtgtcctccgcccaaagagtttcttgcctattccacggtag 623
Query: 424 ggagctcttaaatcactcatgtggctctcagtactattaaagaaaaaaaaagaaaagatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggagctcttaaatcactcatgtggctctcagtactattaaagaaaaaaaaagaaaagatg 683
Query: 484 gaagcttggggcgttttctatctaccctcttgatctgttgaagattggagacagagatgc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaagcttggggcgttttctatctaccctcttgatctgttgaagattggagacagagatgc 743
Query: 544 tgctttctaggaaagaaaattcctagaaataatctaaggagggggataaagaagccactt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgctttctaggaaagaaaattcctagaaataatctaaggagggggataaagaagccactt 803
Query: 604 tcccccctgtgatgtgatgacagcttaataaagggttttactctga 649
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcccccctgtgatgtgatgacagcttaataaagggttttactctga 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_k18.g1 MSMg01no301_k18.g1 CHROMAT_FILE:
MSMg01no301_k18.g1 PHD_FILE: MSMg01no301_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:07 2005
(294 letters)
>mm_chr8_37825679_37826372
Length = 694
Score = 569 bits (294), Expect = e-167
Identities = 294/294 (100%)
Strand = Plus / Minus
Query: 1 atagaattgtgtgctttaaaatcttttggtctttctcaagatcatcttctgtgttcaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atagaattgtgtgctttaaaatcttttggtctttctcaagatcatcttctgtgttcaacc 435
Query: 61 taaagaaaataaagataaaacgaaaagcaaatccagttagaatgtgcaccattgacgtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 taaagaaaataaagataaaacgaaaagcaaatccagttagaatgtgcaccattgacgtaa 375
Query: 121 agcatctcgtttcgttgccggacatgtgacgtcatctagttcataggcatgtgatgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agcatctcgtttcgttgccggacatgtgacgtcatctagttcataggcatgtgatgttta 315
Query: 181 agagcaagagagtggaggcaagttgcgtcaaaccaaaagaaagtatgactcaagtccctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agagcaagagagtggaggcaagttgcgtcaaaccaaaagaaagtatgactcaagtccctt 255
Query: 241 agtgagtttggggcttgtgaatttttatttactcattttgacttatgtatttgt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agtgagtttggggcttgtgaatttttatttactcattttgacttatgtatttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
