Query= MSMg01no302_j14.b1 MSMg01no302_j14.b1 CHROMAT_FILE:
MSMg01no302_j14.b1 PHD_FILE: MSMg01no302_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:16 2005
(679 letters)
>mm_chr8_45110460_45111537
Length = 1078
Score = 1185 bits (613), Expect = 0.0
Identities = 664/683 (97%), Gaps = 9/683 (1%)
Strand = Plus / Minus
Query: 1 tcagtcattctattacctcattttataattaaaaatcaccttagcacccatctctcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tcagtcattctattacctcattttataattaaaaatcaccttagcacccatctctcacca 819
Query: 61 cttcaaagaaaattaaatagaaaactgtttggctgacagggaagctatctcagtctttta 120
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 818 cttcaaagaaaattaaatagaaaactgtttggctgacatggaagctatttcagtctttta 759
Query: 121 aacattgccatagtttaaaattcccttttcaaaattgaaactgcagtagtcaaccctaaa 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 758 aacattgccatagtttaaaattctcttttcaaaattgaaactgcagtagtcaaccct-aa 700
Query: 181 aaac-gcttattttgttggttgctaggtacagctttgtttctcttgttagggaaaaaaaa 239
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 699 aaactgcttattttgttggttgctaggtacagctttgtttctcttgttaggg-aaaaaaa 641
Query: 240 atccacaaaaagataaagtgtacagtgaagtaggtaatgtatttcattccatatcacaac 299
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 640 atccacaaaaagataaagcgtacagtgaagtaggtaatgtgtttcattccatatcacaac 581
Query: 300 agtttattc--tcaggtagagtgcagagctgagataaagcaatctggactatctgcagag 357
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agtttattctatcaggtagagtgcagagctgagataaagcaatctggactatctgcagag 521
Query: 358 gtcatgcagttaaacttttcagaggtgtttattctggaagcctgcatggcaggatctgaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtcatgcagttaaacttttcagaggtgtttattctggaagcctgcatggcaggatctgaa 461
Query: 418 gaagcgccctcaaattgaatgtggtatgggctaaccatgagatatgaaatgaagtacaag 477
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 460 gaagcgccctcaaattgaatgtggtatgggctaaccatgagatgtgaaatgaagtacaag 401
Query: 478 caaaaatgagacgtgacttgagaccttcttctcctttgccacacctctgagctttttctt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 caaaaatgagacgtgacttgagaccttcttctcctttgccacacctctgagctttttctt 341
Query: 538 ctccataaagccccatcaaggaaaacaaacaacaacaaacattatccatttgccttccaa 597
| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||
Sbjct: 340 ccccataaagccccatcaaggaaaaca---aacaacaaaccttatccatttgccttctaa 284
Query: 598 tctcaaatcttgattgcattctatttttttt-attatgatttcaaaacagtatggaaatg 656
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 283 tctcaaatcttgattgcattctattttttttaattatgatttcaaaacaggatggaaatg 224
Query: 657 gaagagtgttgacagtaaaggaa 679
|||||||||||||||||||||||
Sbjct: 223 gaagagtgttgacagtaaaggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1078
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1068
Effective search space: 714492
Effective search space used: 714492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_j14.g1 MSMg01no302_j14.g1 CHROMAT_FILE:
MSMg01no302_j14.g1 PHD_FILE: MSMg01no302_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:16 2005
(627 letters)
>mm_chr8_44910741_44911767
Length = 1027
Score = 1118 bits (578), Expect = 0.0
Identities = 612/624 (98%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 4 ttaaatgtaatctataaataagaaggagtgagcatgttaagccctgacataataaacttt 63
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 206 ttaaatgtaatctataaataagaaggagtgagcatgttaagttctgacataataaacttt 265
Query: 64 aaacaaaaagtatttaaagtgatggtagcaatactacttactcattgaataaatttccac 123
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 aaacaaaaattatttaaagtgatggtagcaatagtacttactcattgaataaatttccac 325
Query: 124 caagagaatattataattctaggcatttacatgccaaacccaaattaatttaaataaaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caagagaatattataattctaggcatttacatgccaaacccaaattaatttaaataaaac 385
Query: 184 actttatataaaatcatatgttgaccccaacaacaaaataaatgacagaaagtactgaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actttatataaaatcatatgttgaccccaacaacaaaataaatgacagaaagtactgaaa 445
Query: 244 attattgaaactcggcaacacactactgaaaggaaattgtttccagaaagaaaccacgta 303
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 446 attattgaaacttggcaacacactactgaaaggaaattgggtccagaaagaaaccaggta 505
Query: 304 ggaagaaagctacaaactttgtagaactgaatgaaaatgaaaacacagccagacaaaacc 363
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 506 ggaagaaagctacaaactttgtagaactgaatgaaaatgaaaaca--gccagacaaaacc 563
Query: 364 tatgggacaaaatgtagccaagtctaagagggaatttcacagcacagagcacctacaacg 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 564 tatgggacaaaatgtagccaagtctaagagggaatttcacagcacagagcacctacaatg 623
Query: 424 aaaacccggggagaactgacacaattcaaaagctttagaaaaacaatacttgaaaagagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaacccggggagaactgacacaattcaaaagctttagaaaaacaatacttgaaaagagc 683
Query: 484 agctatgaagaagtataaatttaaggccgaaattaatagaatagaaacgaaaaatatcag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agctatgaagaagtataaatttaaggccgaaattaatagaatagaaacgaaaaatatcag 743
Query: 544 tgagacaagttggttcttaaaaaatgtgtgatcagcacatcttcagcctaatttaccaaa 603
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgaaacaagttggttcttaaaaaatgtgtgatcagcacatcttcagcctaatttaccaaa 803
Query: 604 ggaaagagggcacaaattaataaa 627
||||||||||||||||||||||||
Sbjct: 804 ggaaagagggcacaaattaataaa 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
