BAC Information

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BAC

Clone NameMSMg01-302L23
Chromosome8 (Build37)
Map Location 29,626,500 - 29,626,815
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1698, EG666422, LOC666430
Downstream geneEG666446, LOC100042598, Unc5d, LOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302L23.T7 (MSMg01no302_l23.b1)MSMg01-302L23.TJ (MSMg01no302_l23.g1)
ACCAG428552AG428553
length722851
length of high quality
(start - end)
320 (45 - 364)175 (74 - 248)
definitionCHROMAT_FILE: MSMg01no302_l23.b1 PHD_FILE: MSMg01no302_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:27 2005CHROMAT_FILE: MSMg01no302_l23.g1 PHD_FILE: MSMg01no302_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCATATCCTCCTTTGAGCGCTGTGTCTAGATTTTACCTTTAGTGTA
GCTTTTTGAATTACATGTTGACAGGAAAGGAATGAAATTTCCTCTGTTGA
TCTCGGGTCCAAGAGTACTGTCCTCTGTGGTGACTTCAGGATCAGTTCGA
TAGCTCTGTATTGCTTTTTCAGATGGGATCCATTCTCCAAATCCATCTAG
AACCAGCATGGAGTCAGAAATTATCAGATGTCAGCATCTTTTCCCTTTAC
AGGAAAAGCTACAATTTTCATCTTGATGATTTTATTGAAATGGAAATTCT
TGTATCACTCTTCNANGTAAGCTGANNACCCCGNCCCGTTGTTGGGGCAG
GGTTTGGGTGACAGACTCTTTTTTAACTCGATTCTAACTCACCTTACGGG
AGTGTAGGCTATTTCCTAGGGTTAGCTACAACCAACTTAGTAACTGCACT
AAAGCAATCTGGGAGAAGTTATCATTGAAGTAACATATCCCCTCTCTGAA
AGCAATATACTTTTAGCATATTAATTTTCAGTGTTTGTCCCAAGTAAGCA
TTTTAACCAACAATCGTGGAATGATTTGCATTCTGCTTTTTTTTCCTCTA
ATGGATCATGGCTCTTCAGTTCTCACCAATGATTGTATGTTGTTTAGGGC
AAAAACAAAGCAAAAAAAAATT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTCTACTAGTGAAAAAGCGGCCGTGT
GTGTGTGTGTGTATATTAAGGTGTGCATCTATATGTGTATGTATATATAC
GTATGTGTGTGTTTTACGATGTGTGTATATATGTATGTATGTATATATAT
ATATATATATTAAGGTGTGCATATATGTGTATATATATATATGTGTGTGT
GCCTCCTCCTTATCCATCTTCTTCCATCTGTTCTTCTACACCTTCTTTCT
CTCTTCCACCATGTTCCCAATTCTTTTTTTTTTCCGTGTTCTTATTGTAT
GCTGATCGACCGCATTTTTTTTTTTTCCCCCCCCCCCTTTCCATTGCATT
TTATGTACTAACATCCATCGTTGTTCTCATCCCCCCCCCATTATTTATTT
TTTTATTCTTCTCTTTCCATTATCCCAATATATCATTCATCTGTTACTCC
TTTTTTTCTTACTTACCGTATTCTATCTCTCCTTACTCTCTTTTACTCTA
CTCTTTTTCTCACTTCCCCTTCCCTTCATTACTCCCTCCCCCCTTCCCTT
CTTTTTACCTCTTCCTACCCATACAATATTATACACTAATATCTCTTTCT
TCCCTTCACTTCCCCACTTTCATTTCTTACATTCCTAACACTTTCCACCT
TCTCTCTTTATTTCCTCTATGTTTCCGTCTACACATTTCTCCTTCCCCTA
TTTCCTCTCCACTACCTCTCTTCCCATATACTCCCACATACCCCCTCCCT
CCATACTACTCCTCACTCCTCCCCTCCTTAATTTTTCCCCCCACCCATAT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_l23.b1 MSMg01no302_l23.b1 CHROMAT_FILE:
MSMg01no302_l23.b1 PHD_FILE: MSMg01no302_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:27 2005
         (320 letters)



>mm_chr8_29626297_29627017
          Length = 721

 Score =  375 bits (194), Expect = e-108
 Identities = 287/318 (90%), Gaps = 5/318 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccatatcctcctttgagcgctgtgtctagattttaccttt-agtgtagctttt 62
           ||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||
Sbjct: 519 ggaattcccatatcctcctttgagcgctgtgtaaagattttaccttttagtgtagctttt 460

                                                                       
Query: 63  tgaattacatgttgacaggaaaggaatgaaatttcctctgttgatctcgggtccaagagt 122
           || || | |||| ||||||||||| ||| |||||||||||||| ||| ||||||||| ||
Sbjct: 459 tggataatatgtggacaggaaaggcatgcaatttcctctgttgctctagggtccaagggt 400

                                                                       
Query: 123 actgtcctctgtggtgacttcaggatcagttcgatagctctgtattgctttttcagatgg 182
           ||||||||||||||||| |||||||||||||| |||||||||||||||| | ||| ||||
Sbjct: 399 actgtcctctgtggtgagttcaggatcagttcaatagctctgtattgctctctcaaatgg 340

                                                                       
Query: 183 gatccattctccaaatccatctagaaccagcatggagtcagaaattatcag-atgtcagc 241
           |||||||||||||||||| ||||| ||||||||| ||||||| |||||| | ||||||||
Sbjct: 339 gatccattctccaaatccttctagtaccagcatgaagtcagagattatc-gtatgtcagc 281

                                                                       
Query: 242 atcttttccctttacaggaaaagctacaat-tttcatcttgatgattttattgaaatgga 300
           |||||||||||||||| ||||||||| | | ||||||||||||||  ||| |||||||||
Sbjct: 280 atcttttccctttacatgaaaagctata-tgtttcatcttgatgacattactgaaatgga 222

                             
Query: 301 aattcttgtatcactctt 318
           ||||||||||||| ||||
Sbjct: 221 aattcttgtatcattctt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space:   221432
Effective search space used:   221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)