BAC Information

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BAC

Clone NameMSMg01-303M14
Chromosome8 (Build37)
Map Location 30,344,800 - 30,345,266
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666446, LOC100042598, Unc5d
Downstream geneLOC100041237, EG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303M14.T7 (MSMg01no303_m14.b1)MSMg01-303M14.TJ (MSMg01no303_m14.g1)
ACCAG429276AG429277
length746745
length of high quality
(start - end)
491 (39 - 529)238 (119 - 356)
definitionCHROMAT_FILE: MSMg01no303_m14.b1 PHD_FILE: MSMg01no303_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:47 2005CHROMAT_FILE: MSMg01no303_m14.g1 PHD_FILE: MSMg01no303_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CCATTGCTCCAGAAGGCAAACTTCTGCCTATGTGGTCACTAAGTGTCTGT
GAGTCCTGCCTTTAAAAAGCAAAGCTTAAAATTAGATAAGATGAGTCATT
TCAGTCAACTGAAACAGGAAAGGAGAGATAACAGATGAAGAAAAACTGAG
ATGTGTGTAAGGGTAAAAGCTAGAAAGTTTGTCCTCGCCTGACACTGCTC
TCACAAAACACACACACACACACACACACACACACACACACACACGTGCG
CGCTTTATTTGTGAGGATAATAATTTTATCTGCAGGAGAACCATTGAAGA
TATTGACAGCTTTGTCCGAACAGTGAAATCCAGAGCCTTATCAGCTGTTA
AGTGGTAAACGCGACAGGAATGAATGGGAATGCAGACCCAAGGCAAACCC
CAGGGAACCAGATGAATGAAGTGAGCAGGCCTCACCTGTACTGTGTAGAG
GACAGATGCCATAGCATAATTCTAGACAAGGCATTGAGCAAAACATAACA
TGTGGCGGAAACTCCACAATCTAGAAATAACATTACTGTTACATAAATAT
CCATTTTTACTCAAACTCATGAAACTCAGGAAAACAAACACAAAGTCATG
CTCTACCATAACAAAAGCAAGCCAATGGAGATGCACCCAGGGTTTTACTT
ATCAGAGTAGGCTATCAGCGAAATTTGTGACTTTACTCAAAATATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATCAGCAGCCAGAGGGACAATAGATTAACACT
CTGGGGATGCTGGACTCCATTAGAAACAGATTAGAAAACAGTGGGGAGAA
ACCTCATGGAACTTAATAATAAATAATAATAATATAAAGAAGGAGATGAT
GAAGGAGGAGGAGCAGTAAAAGGTAGACATGATGGTCCATGCCTTCACAT
CTATAATACTGAGGCAGGAAGGTCACCAGTACAAGGGCAGCTTTGGCTGC
ATAGTGAGAATCTGAGAATTGGGTAGGTGTGGTTTACAGGAAGGGGGTGA
TATATTGATATTATAACCCCCCCCCCCGATTAACAAGAGGTACTGCAGAG
AAACAAGTTTTAAAAATATATCACATGTACTGGCTAGTTTTGTGTCAACT
TGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCATTTGAGGAAATGC
CTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGG
AAAGGCCCCTTGTGGGTGGGACAATCCCGGGCTTGCAGTCTTGGGTTCTA
TAAGAGAGCAGGCTGAGCAAGCCAGGGGAAACAAGCCAGTAAAGAACATC
CCTCCATGGCCTCTGCAGCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCA
GTCCTGACTTCCTTTGGTGATGAACAGCAGTATGGAAGTGTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_m14.b1 MSMg01no303_m14.b1 CHROMAT_FILE:
MSMg01no303_m14.b1 PHD_FILE: MSMg01no303_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:47 2005
         (491 letters)



>mm_chr8_30344596_30345486
          Length = 891

 Score =  768 bits (397), Expect = 0.0
 Identities = 454/483 (93%), Gaps = 16/483 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcccattgctccagaaggcaaacttctgcctatgtggtcactaagtgtctgtga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcccattgctgcagaaggcaaacttctgcctatgtggtcactaagtgtctgtga 264

                                                                       
Query: 65  gtcctgcctttaaaaagcaaagcttaaaattagataagatgagtcatttcagtcaactga 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||
Sbjct: 265 gtcctgcctttaaaaagcaaagcttaaaattagataaaatgagtcatttcagggaactga 324

                                                                       
Query: 125 aacaggaaaggagagataacagatgaagaaaaactgagatgtgtgtaagggtaaaagcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 aacaggaaaggagagataacagatgaagaaaaactgagatgtgtgtaagggtaaacgcta 384

                                                                       
Query: 185 gaaagtttgtcctcgcctgacactgctctcacaaaacacacacacacacacacacacaca 244
           |||||||||||||||||||||||||||||||||                |||||||||||
Sbjct: 385 gaaagtttgtcctcgcctgacactgctctcaca----------------acacacacaca 428

                                                                       
Query: 245 cacacacacacacgtgcgcgctttatttgtgaggataataattttatctgcaggagaacc 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cacacacacacacgtgtgcgctttatttgtgaggataataattttatctgcaggagaacc 488

                                                                       
Query: 305 attgaagatattgacagctttgtccgaacagtgaaatccagagccttatcagctgttaag 364
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 489 attgaatatattgacagctttgtcccaacagtgaaatccagagccttatcagctgttaag 548

                                                                       
Query: 365 tggtaaacgcgacaggaatgaatgggaatgcagacccaaggcaaaccccagggaaccaga 424
           ||| ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 549 tggaaaacgtgacaggaatgaatggaaatgcagaccaaaggcaaaccccagggaaccaga 608

                                                                       
Query: 425 tgaatgaagtgagcaggcctcacctgtactgtgtagaggacagatgccatagcataattc 484
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgaatgaagtgagcagacctcacctgtactgtgtagaggacagatgccatagcataattc 668

              
Query: 485 tag 487
           |||
Sbjct: 669 tag 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)