BAC Information

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BAC

Clone NameMSMg01-303N15
Chromosome8 (Build37)
Map Location 98,375,800 - 98,376,387
singlet/doubletsinglet
Overlap geneBC031853
Upstream geneCoq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, LOC100041972
Downstream geneGot2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303N15.T7 (MSMg01no303_n15.b1)MSMg01-303N15.TJ (MSMg01no303_n15.g1)
ACCAG429321AG429322
length748743
length of high quality
(start - end)
583 (64 - 646)249 (66 - 314)
definitionCHROMAT_FILE: MSMg01no303_n15.b1 PHD_FILE: MSMg01no303_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:52 2005CHROMAT_FILE: MSMg01no303_n15.g1 PHD_FILE: MSMg01no303_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCC
AGGACATCCCGCACGACACACAGAGAAACCCTGTCTCGAAAAACCAAAAT
AAAAATAAATAAATAAATAAGTCCCGGGCTGGAGAGACAGCTCAGCGTTT
AAGATCACTGACTGCGCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAAC
ACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGCT
GTGTCTGAAGAGAGCGAAAGTGTATTCATATACATAAAATAAATAAATCT
TTTTTTTGGTTTGTTTTAAAATCCCATTTCCTCCCCACAAAGGCAGTGAT
TCAGCCACAACCACTCTCCAACCCTCCTGATAAGGTCAGCCCACCACAAA
GGAGGAGGTCCACCACCAGTACATAGGCCCCTGAGGATGCTTCCCAGACG
TGCCTTCTAATGATGGACAAAGCTGGGAACATCAACCCAGGAAGGGAGAG
AGAAGTGCAAGTGCTCTGGGACATCTGCCATCCAGCAATTAAGGGACACA
GTCCCAGTGCTGGGGCCCTCTGCTGGGGCCAGAATCAGAAACACCAGTCT
GGCCACAGACTTCTTCCTCTTATGACACAATCTCCCTTCCCAGCCAGCAA
CTCAGCAAAATCTCAGTGGTGAGTAGTGAAGGCAGTCTGGGGACTCCCCT
GGTCCAGGCATTGCTCCAGAGAGGTCTAAGGCCATCCATTTCCACATG
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCCAGAAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCAGAATATTGGACATAGTACTACCAGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACA
TGCTCCACTACGCCCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATT
AGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACT
TGATACTCAAGAAAAATGATGACTGAAGTGTGGACACTATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_n15.b1 MSMg01no303_n15.b1 CHROMAT_FILE:
MSMg01no303_n15.b1 PHD_FILE: MSMg01no303_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:52 2005
         (583 letters)



>mm_chr8_98375606_98376587
          Length = 982

 Score =  996 bits (515), Expect = 0.0
 Identities = 569/589 (96%), Gaps = 7/589 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgacacacagagaaaccctgtctcgaaaaaccaaaataaaaataaataaataaataa--- 57
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 195 cgacacacagagaaaccctgtctcgaaaaaccaaaataaaaataaataaataaataaata 254

                                                                       
Query: 58  -gtcccgggctggagagacagctcagcgtttaagatcactgactgcgcttccagaggtcc 116
            |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 255 agtcccgggctggagagacagctcagcgtttaagagcactgactgctcttccagaggtcc 314

                                                                       
Query: 117 tgagttcaattcccagcaaacacatggtggctcacaaccatctgtaatgggatctgatgc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgagttcaattcccagcaaacacatggtggctcacaaccatctgtaatgggatctgatgc 374

                                                                       
Query: 177 cctcttctgctgtgtctgaagagagcgaaagtgtattcatatacataaaataaataaatc 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 375 cctcttctgctgtgtctgaagagagcgaaagtgtattcatatacataaaataaataaacc 434

                                                                       
Query: 237 tttttt-ttggt-ttgttttaaaatcccatttcctccccacaaaggcagtgattcagcca 294
           |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttttttgttgttgttgttttaaaatcccatttcctccccacaaaggcagtgattcagcca 494

                                                                       
Query: 295 caaccactctccaaccctcctgataaggtcagcccaccacaaaggaggaggtccaccacc 354
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |  || 
Sbjct: 495 caaccactctccaaccctcctgataaggtcagcccaccgcaatggaggaggtctagaac- 553

                                                                       
Query: 355 agtacataggcccctgaggatgcttcccagacgtgccttctaatgatggacaaagctggg 414
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 554 agtacataggcccctgaggatgcttcccagatgtgccttctaatgatggacaaagctggg 613

                                                                       
Query: 415 aacatcaacccaggaagggagagagaagtgcaagtgctctgggacatctgccatccagca 474
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aacatcaacccaggaaagaagagagaagtgcaagtgctctgggacatctgccatccagca 673

                                                                       
Query: 475 attaagggacacagtcccagtgctggggccctctgctggggccagaatcagaaacaccag 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 attaagggacacagtcccagtgctggggccctctgctggggccagaatcagaaacaccag 733

                                                            
Query: 535 tctggccacagacttcttcctcttatgacacaatctcccttcccagcca 583
           ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 734 tctggccacagacttcttcctcttatgacgcaatctcccttcccagcca 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 982
Length adjustment: 10
Effective length of query: 573
Effective length of database: 972
Effective search space:   556956
Effective search space used:   556956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)