Query= MSMg01no304_a01.b1 MSMg01no304_a01.b1 CHROMAT_FILE:
MSMg01no304_a01.b1 PHD_FILE: MSMg01no304_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:03 2005
(768 letters)
>mm_chr8_106997276_106998443
Length = 1168
Score = 1411 bits (730), Expect = 0.0
Identities = 759/770 (98%), Gaps = 4/770 (0%)
Strand = Plus / Plus
Query: 1 tcacaaaaggaaaaactaatatgcttgatcacacttaa--tatctttgaaaactctccta 58
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 201 tcacaaaaggaaaaactaatatgcttgatcaca--taaaatatctttgaaaactctccta 258
Query: 59 gagaccaaggacaatgaaggagaatggacttagaggggaaaagaacaagaagcaaaatca 118
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 259 gagaccaaggacaatgaaggagaatggacttagaggggaaaagagcaagaagcaaaatca 318
Query: 119 atggcagcccagacacgggaatcatatataaaccatgtactagatcatagagtaactctt 178
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 319 atggcaacccagacacgggaatcatatataaaccatgtactagaccatagagtaactctt 378
Query: 179 agaaagcactagaaaaaaagacctgcctaagaaaaaaagtcaacagtagtatgggctggt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agaaagcactagaaaaaaagacctgcctaagaaaaaaagtcaacagtagtatgggctggt 438
Query: 239 aagcaagttcactggacagggatcatacatagctcttaaacacaggaaaactcctccatt 298
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagcaagttcactggacaggaatcatacatagctcttaaacacaggaaaactcctccatt 498
Query: 299 tcattgtaataaaagaaaatactattgaaactacactgtagtatctttcttctctcctga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcattgtaataaaagaaaatactattgaaactacactgtagtatctttcttctctcctga 558
Query: 359 cagattcagaacatctgaagaatagacagcataaacattactggctagagtgtacacatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagattcagaacatctgaagaatagacagcataaacattactggctagagtgtacacatg 618
Query: 419 tatccatgatgaaataacttggtagttaccttctttctttcttatggattgattgattga 478
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 619 tatccatgatgaaataacttggtagttgccttctttctttcttatggattgattgattga 678
Query: 479 ttgattgattgagacaagacctcattgtgtagccctggctggcttacaaactgatacata 538
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 679 ttgattgattgagacaagacctcattgtgtagccttggctggcttccaaactgatacata 738
Query: 539 caccaagctggcctcaaacacacagagatccccctgcttctgactccagcgtggagttaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 caccaagctggcctcaaacacacagagatccccctgcttctgactccagcgtggagttaa 798
Query: 599 agattagcacctccatgcccagcctttaagtttttgttttatttgtatttgtacaccttt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agattagcacctccatgcccagcctttaagtttttgttttatttgtatttgtacaccttt 858
Query: 659 tataataaaatctatatgtataagaaaactctacaaattacttttacatgtcaatgttct 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tataataaaatctatatgtataagaaaactctacaaattacttttacatgtcaatgttct 918
Query: 719 taactgttgtaatatctaatagttgtacataatatttatcaataaattca 768
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 taactgttgtaatatctaatagttgtacataatatttatcaataaattca 968
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1168
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1158
Effective search space: 877764
Effective search space used: 877764
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_a01.g1 MSMg01no304_a01.g1 CHROMAT_FILE:
MSMg01no304_a01.g1 PHD_FILE: MSMg01no304_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:04 2005
(691 letters)
>mm_chr8_107154736_107155826
Length = 1091
Score = 1135 bits (587), Expect = 0.0
Identities = 648/691 (93%), Gaps = 37/691 (5%)
Strand = Plus / Minus
Query: 1 gacaccaaccttcaacctgaagggcagtcccgctgggagactctttaggtcccaggacaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1086 gacaccaaccttcaacctgaagggcagtcccgttgggagactctttaggtcccaggacaa 1027
Query: 61 agacaggaatagaaaggacttagtgttgaagctagaaatgccagtttaggaccctctaaa 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1026 agacaggaatagaaaggacttagtgttgaagctagaaataccagtttaggaccctctaaa 967
Query: 121 ttctggttaggtccatacctggaggaacgggcttcataggttctgagcgtgtccataata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 ttctggttaggtccatacctggaggaacgggcttcataggttctgagcgtgtccataat- 908
Query: 181 cgttcagtccataacacgtctactgacttgggtaataggccaggagtgagcagaagggaa 240
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ---------------acgtctactgacttgggtaataggccaggagtgagcagaagggaa 863
Query: 241 aattcatctttaaagatggagtggtagttcactccactttacccactactggcagcctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 aattcatctttaaagatggagtggtagttcactccactttacccactactggcagcctct 803
Query: 301 gtatcaatgcacacacacacacacacatacacacacacacacacacacacacacacacac 360
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 802 gtatcaatgc------------------acacacacacacacacacacacacacacacac 761
Query: 361 acacacactggtgcaccctcctcaacgcacactccccatccctcccctccaacacccccc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 760 acacacactggtgcaccctcctcaacgcacactccccatccctcccctccaacacccctc 701
Query: 421 taaactaccccccatcccgagcgagcctccttccagctacctgccccgcccctggcgggt 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 taaactaccccccatcccgcgcgagcctccttccagctacctgccccgcccctggcgggt 641
Query: 481 ttgcggtcctagaagggaggtgggggattcccgagggcgagtggatgcgtcagcctttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttgcggtcctagaagggaggtgggggattcccgagggcgagtggatgcgtcagcctttgc 581
Query: 541 agcagcccgggaggacaggggcgggggcgggggcggcgggggcggaggcgggggcgggag 600
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 580 agcagcccgggaggacaggggcgggggcgggggcgg---gggcgggggcgggggcgggag 524
Query: 601 cgggggtaggggtaagggcggaagtctgactggtagaggtttaaataggaggccctagaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cgggggtaggggtaagggcggaagtctgactggtagaggtttaaataggaggccctagaa 464
Query: 661 cagcgaccaagcgccagctgaggggctgaga 691
|||||||| ||||||||||||||||||||||
Sbjct: 463 cagcgacccagcgccagctgaggggctgaga 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
