BAC Information

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BAC

Clone NameMSMg01-305A22
Chromosome8 (Build37)
Map Location 60,838,570 - 60,838,841
singlet/doubletsinglet
Overlap genenone
Upstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305A22.T7 (MSMg01no305_a22.b1)MSMg01-305A22.TJ (MSMg01no305_a22.g1)
ACCAG430150AG430151
length1,2241,238
length of high quality
(start - end)
340 (58 - 397)380 (74 - 453)
definitionCHROMAT_FILE: MSMg01no305_a22.b1 PHD_FILE: MSMg01no305_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:31 2005CHROMAT_FILE: MSMg01no305_a22.g1 PHD_FILE: MSMg01no305_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCATCACTGCGGCGCTATAGACTCCTAAGGGAGXXXXXXXXXXXXXX
XXXXXXXGAGGCAGACTGGGAAAACAGAAGCAAGTCCAGAAAGACATTAG
CAGAGTTCATCATCATAGACCCATGGTCACTATTTCCATCATCTGTATTT
ATAACTGTACTGTACCTGTTTCATATATATATAATGAGATAGATATATAG
ATATATAGATTACATAGAAGATACATAGATACATATAGATAGAGACTAGA
TGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATACATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTT
TTTTATAGGGCGAAGAATCCCTATTTGATATTAGGTAATAAGGAGGAGCT
ATTTTTTTTTCCCCCCCCCCCAGANAGACCTCCTCCTCAAAAAAAAGAAG
GGGGNNGNTGNGNTNNNGNNNGGNGCCCTCTCTCTCGTAGNGTTNGTGTG
TGGTTTCGCTTTGTGTTGCCTGCTGNTGCCGCTGTTTTCTTCTTCCTTTC
TTGCTGATGTTTTCGGGCGCCCGCTTGCTTTCCTGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTATGATTTTGTGGTGCACATGTGGCATGAA
TCAAAACATACATCCTTTACTTAATTTCACTTCCCAGGCTGTTACTACCA
TGCAAATATGTTCTTGATAACACCTATATGACTATCACACCTCTTCTTCT
AGTATATCATGCAACCTTTGCACAAGCTTTTTAATGAAATCTCCGCGAAT
AAAACTCCCGTTCTTAAAACTCTGCCTTGCAAAAAGACAACCAATTGCCC
ATAAAACCTTTGAACTATACCCCGCATTCGTCTATGGCACTCTTTTTTAT
ACACCACCAAATTGTTATATACCTCAGCTTCAAAATCACAGTATCTCTAG
GTTCTCCACCTCCCATACTTAAAAATTCTCCTGCTCAAAAATAACACAAC
ATTTCTCCGCATTAATTCTCAATGCTCTCCTTCTAGGCCTCTATTATTTA
CTCTCTCCTTTCACTTTTACCTCA
NNNTTAGCTGAGGGNTAGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTAGTCAGCAAATACCTAACCATAA
TAAAACCAACATATAGAAAACCAACACCAACATCCTGATGTTCTGCATGC
AGAAGAATGGAAAATGATCCATATTTAACACTTTGTACAAAGCTTACATC
TATGTGGATCAAGGACTTCAACTGAAAACAAGATATATTGAATCTAATAG
AAGAGGATGAGAGGTAGCCTGAAACATATTGGAACAAGGTAAAATTTCCT
GAGTAGACAGTAGTGGTTCAGGCTCTATGATCAACAATTGAAAAATGGGA
TCTCATGAAACTTAAAATCTTCTATAAAGCAAAGGAAACTGTTGATAAGA
AAATTTGTTATCTACAGATTGGAAAAATGTCTTCAGTAACTCTATATCAG
ATAGATTTTTTTTCCCCCCCCCACANAAAGAACTCCCCCCTCCAAAAAAA
AAAGGGGCGANNNANCCCAATTTAAAAATTGGGTACAGAACTCAACAGAG
AATTATTAACAGAGGAATCTCAAATAGCCAAGAAGAACTTAAAGAAATGT
TATTTCTCTTAGTCATCAGGGAAATGCAAATCAAAACGACTCCTAGATTC
TTCCTTACACCATTCAGAATGGCTAAGATTAAAATCTCAAGTGACAGCAC
ATGATGGTGAGGATTTGGAGAAAGAGGAACACTCCTCTCTTGGTAATGGG
ATTGCAAACTCTGGAAATCAATCTGGTAGTTCTTCGGAAAATTTTGAGTA
GTTCTAACTGAGGACTTAGCTATACCAGGAGTGGGCATATACCCCAAAGA
TGCTCTACCACTATGTTCCTAACAGCCTTATTTGTAATACCCAGAAGCTA
GAAACAATCCACATGTCCCTCAACTGAAGTATGGATACAGAAAATATGGC
TCATTTAACAATGTTATACTATTCAGCTACAATGAACTGACTCCTGAATT
TGCTGGCAAATGGATGGAATTAAAAAATTTCGTCCCCCTCAAGGAATCCC
AGACCTGAAAAAAATCCTTGGTTATGACCCCCCTGAAAAGGGAACAAACC
CCCAAAGTAAAAGGTACCCCGGATCACCCCCTTGAGAGGTTTGACCCCCA
ACAAAAAGAAGGCTTAAGGGGGAATATTCCCTCCCCTTAAAAGAAGGCCA
AAAAAAAAAGAACCCTTCTTGAAAAAAAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_a22.b1 MSMg01no305_a22.b1 CHROMAT_FILE:
MSMg01no305_a22.b1 PHD_FILE: MSMg01no305_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:31 2005
         (340 letters)



>mm_chr8_60838477_60839220
          Length = 744

 Score =  480 bits (248), Expect = e-140
 Identities = 264/272 (97%), Gaps = 6/272 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggcagactgggaaaacagaagcaagtccagaaagacattagcagagttcatcatcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaggcagactgggaaaacagaagcaagtccagaaagacattagcagagttcatcatcata 306

                                                                       
Query: 61  gacccatggtcactatttccatcatctgtatttataactgtactgtacctgtttc----a 116
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 305 gacccatggtcactatttccatcatctgtatttataactgtactgtacctgtttcatata 246

                                                                       
Query: 117 tatatatataatgagatagatatatagatatatagattacatagaagatacatagataca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tatatatataatgagatagatatatagatatatagattacatagaagatacatagataca 186

                                                                       
Query: 177 tatagatagagactagatgatagatagatagatagatagatagatagatagatagataga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tatagatagagactagatgatagatagatagatagatagatagatagatagatagataga 126

                                           
Query: 237 tagatagatagatag--atagatagatagata 266
           |||||||||||||||  | ||||||| |||||
Sbjct: 125 tagatagatagatagggagagatagacagata 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 744
Length adjustment: 9
Effective length of query: 331
Effective length of database: 735
Effective search space:   243285
Effective search space used:   243285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)